Laboratory of Neuro Imaging UCLA

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Presentation transcript:

Laboratory of Neuro Imaging UCLA

Site PI: Arthur W Toga Director, Laboratory of Neuro Imaging Co-Director, Brain Mapping Center Director, Training Program in Neuroimaging Editor-in-Chief, NeuroImage Principal Investigator, CCB

Core 2 Team Jagadeeswaran Rajendiran (NAMIC representative) Arash Payan Jia Wei Tam Celia Cheung Cornelius Chojatkashani (Neurology representative)

Our Contribution Pipeline Software User-driven application development Collect user requirements/ feedback Design, develop & maintain product User-driven application development Software is continuously evolving with input from internal users and external collaborators Collaborators have access to LONI resources Hands-on user training sessions

Our Contribution (contd...) Pipeline Application Front end to LONI Grid (600 processors) Dissemination SIG meetings (every two weeks) Hands on user training sessions Documentation/ Wiki/ Manuals

NAMIC-specific Participation Pipeline Application Allow for extensible data model Provide robust interface to LONI Grid Hands on user training sessions UNC Collaboration Shape analysis pipelines NAMIC Kit Interoperability Slicer 3 integration SCIRun integration

Pipeline v4 Progress Revamped version 4 Client-Server architecture - Flexible, extensible data model - Modular redesign - Powerful threading model - Minimal Synchronization - Elegant/ easy to use user interface - Redesigned XML Client-Server architecture - Highly scalable (> 1000 inputs) Any DRMAA grid with: - LONI’s Cerebro: Sun Xeon Grid Sun Microsystems is collaborating with LONI in Grid development to support the Pipeline

SLIPIE Progress Pipeline v4 batch mode In Progress - Can execute complete (data-bound) workflows using command line (“-e” option) - Slicer can query Pipeline for list of required parameters - List of parameters expressed in readable XML - Allows for binding parameters on the command line - Batch mode tied to local execution In Progress - Getting list of all parameters - Providing user feedback on progress (status messages)

Future Plans Release a robust version NAMIC Kit Successful integration with Slicer 3/ SCIRun Provide NAMIC with access to computational resources through Pipeline Build useful workflows with NAMIC collaborators Documention/ Manuals/ Wiki Hands on user training sessions