C-BER - Centre for BIOMEDICAL ENGINEERING RESEARCH

Slides:



Advertisements
Similar presentations
Fund BioImag : Interaction of ionizing radiation with matter 1.What is the basis of contrast for x-ray imaging ? 2.By which mechanisms does ionizing.
Advertisements

1 Outline Basic Idea Simple Theory Design Points Calibration of Forces Selected Biological Applications.
Λ1λ1 λ2λ2 2λ22λ2 λ1λ1 λ2λ2 2λ22λ2 Enhancement of Second-Harmonic Generation through Plasmon Resonances in Silver Nanorods Nicholas Wang 1, Patrick McAvoy.
Optics Career Path Works with engineers to produce optics, and assists with research and development Associate Degree Pay Range: $14-$20/hr Generates designs,
ECEN5341/4341Bioelectromagnetics Spring 2015 Frank S. Barnes Contact Info: (303) ECOT 250
EEL 207 Why Study Electromagnetics?
Single Molecule Studies of DNA Mechanics with Optical Tweezers Mustafa Yorulmaz Koç University, Material Science and Engineering.
Optical Tweezers F scatt F grad 1. Velocity autocorrelation function from the Langevin model kinetic property property of equilibrium fluctuations For.
Lecture 8: Measurement of Nanoscale forces II. What did we cover in the last lecture? The spring constant of an AFM cantilever is determined by its material.
STED: Nanoscale 3D Optical Imaging Digvijay Raorane & Arun Majumdar Department of Mechanical Engineering Department of Materials Science University of.
Agilent Technologies Optical Interconnects & Networks Department Photonic Crystals in Optical Communications Mihail M. Sigalas Agilent Laboratories, Palo.
LESSON 4 METO 621. The extinction law Consider a small element of an absorbing medium, ds, within the total medium s.
Optical Tweezers + DNA Stretching Lecture Notes stored at: Then select the “Lecture” button. David Carberry,
“Nanophotonics and Optical Control of Single Nanoparticles” Keonwoo Nam Moscow 2012 Supervisor: Professor A. A. Fedyanin Lomonosov Moscow State University,
An Introductory Information about Optical Tweezers Mustafa Yorulmaz Koç University, Material Science and Engineering.
The Finite Element Method
Theoretical Analysis of a Nanosensor based on WO 3 coated Carbon Nanotube for Ultra-high Sensitive Breath Acetone Sensing Ming Xia, Advisor: Prof. Xingguo.
Fiber Optics Communications Lecture 11. Signal Degradation In Optical Fibers We will look at Loss and attenuation mechanism Distortion of optical signals.
UNIVERSITY OF KENTUCKY College of Engineering RADIATIVE TRANSFER LABORATORY Department of Mechanical Engineering Directed Melting.
EEE 431 Computational methods in Electrodynamics Lecture 1 By Rasime Uyguroglu.
Theoretical Study of the Optical Manipulation of Semiconductor Nanoparticles under an Excitonic Resonance Condition + Reference + T.Iida and H.Ishihara,
School of Electrical and Electronic Engineering Supervisor:A.Prof Yuan Xiaocong,Larry, A.Prof Tang Dingyuan Project Members:Mr. Lee Woei Ming, Mr. Yap.
3D Micromanufacturing Laboratory School of Mechatronics Gwangju Institute of Science and Technology (GIST), KOREA 이 용 구이 용 구 Calculation of optical trapping.
Nicholas DiPreta.  Science of light  How light behaves and interacts with matter.
Sandia National Laboratories Materials & Processing for Si Compatibility Charles T. Sullivan 505/ Center for Compound Semiconductor.
Powerpoint Templates Page 1 Depth Effects of DEP Chip with Microcavities Array on Impedance Measurement for Live and Dead Cells Cheng-Hsin Chuang - STUST.
Computer Graphics & Image Processing Lecture 1 Introduction.
1 Haptic Systems Mohsen Mahvash Lecture 3 11/1/06.
Objective Our goal is to create a radically inexpensive spectrometer for educational purposes using a Raspberry Pi. The prototype is housed in a black.
Lai-Ching Ma & Raj Mittra Electromagnetic Communication Laboratory
OPTOFLUIDIC DEVICES FOR SINGLE CELL MANIPULATION Ana Rita Ribeiro, Ariel Guerreiro, Pedro Jorge New Challenges in the European Area - Young Scientist's.
Introduction to materials physics #3
A MEMS Micro Flow-cytometer Based on Dielectric Particle Focusing and Integrated Optical and Impedance Detection Peter R.C. Gascoyne Department of Molecular.
By Verena Kain CERN BE-OP. In the next three lectures we will have a look at the different components of a synchrotron. Today: Controlling particle trajectories.
Lehigh University Prof. Svetlana Tatic-Lucic Workshop on BME Teaching of Innovation, Design & Entrepreneurship.
3.052 Nanomechanics of Materials and Biomaterials Prof. Christine Ortiz DMSE, RM Phone : (617) WWW :
Cell membrane experiments Dept. of Experimental Orthopaedics and Biomechanics Bioengineering Reza Abedian (M.Sc.)
All-Dielectric Metamaterials: A Platform for Strong Light-Matter Interactions Jianfa Zhang* (College of Optoelectronic Science and Engineering, National.
Date of download: 7/5/2016 Copyright © ASME. All rights reserved. From: Boundary/Finite Element Modeling of Three-Dimensional Electromagnetic Heating During.
The Department of Physics Professor C V Sammut Head of Department University of Malta.
Date of download: 9/17/2016 Copyright © 2016 SPIE. All rights reserved. The implementation of the angular spectrum of plane waves method in the finite.
Generation of intense few-cycle pulses from the visible to the mid-IR Josh Nelson 1 Danny Todd 2 Adam Summers 3 Derrek Wilson 3 Dr. Carlos Trallero 3 1.
Single particle trapping and characterization
Specific features of motion of the photon density normalized maximum
Topic report Laser beam quality
Several training fellowships available
Generating Accelerating Light with Metasurfaces
Bucharest (ROMANIA), October 2017
Development of a 3-D Fibre Based Laser Light Force Optical Trap
Single Tapered Fibre “Optical Tweezers”
Single Tapered Fibre “Optical Tweezers”
FRED Optimization FRED: A software tool for modern engineering.
Prof: Ming Wu GSI: Kevin Han Discussion 1/17/18
Dielectrophoretic particle trap: Novel trapping and analysis technique
AN ALGORITHM FOR LOCALIZATION OF OPTICAL STRUCTURE DISTURBANCES IN BIOLOGICAL TISSUE USING TIME-RESOLVED DIFFUSE OPTICAL TOMOGRAPHY Potlov A.Yu, Frolov.
Electromagnetic Dosimetry
Mont-Carlo simulation of OCT structural images of subcutaneous
Lecture 4 - Transverse Optics II
Volume 87, Issue 2, Pages (August 2004)
Hour 38 Scattering Cross Sections
CH4: Reflection and Refraction in a Homogenous Medium.
Viscoplasticity Enables Mechanical Remodeling of Matrix by Cells
Vysakh Vasudevan*, N. Sujatha
Lecture 4 - Transverse Optics II
Probing Red Blood Cell Morphology Using High-Frequency Photoacoustics
Biomedical Signal processing Chapter 1 Introduction
Volume 104, Issue 1, Pages (January 2013)
Viscoelasticity as a Biomarker for High-Throughput Flow Cytometry
Quantitative Modeling and Optimization of Magnetic Tweezers
Viscoplasticity Enables Mechanical Remodeling of Matrix by Cells
Presentation transcript:

C-BER - Centre for BIOMEDICAL ENGINEERING RESEARCH CAP - Centre for APPLIED PHOTONICS Computational Modelling of Bioparticles Trapping using Optical Fiber Tweezers Joana S. Paiva1,2, Rita S. R. Ribeiro1,2, Pedro A. S. Jorge1,2, Carla C. Rosa1,2, Joao P. S. Cunha1,3 1INESC Technology and Science, Portugal; 2Physics and Astronomy Department, Faculty of Sciences, University of Porto; 3Faculty of Engineering, University of Porto The Optical Fiber Tweezers (OFTs) Optical Tweezers (OT) are optical devices that, based on the forces exerted by a strongly focused optical beam on a dielectric particle with few microns, are able to trap and manipulate it [1-2]. The optical forces exerted on the particle are resultant of the momentum transfer between radiation field and the scattering particle [2]. Conventional Optical Tweezers (COTs): (A) (B) Composed by a set of bulk elements incorporated in an inverted microscope (small working distances; limited degree of portability; hard handling; difficulties in focusing). Optical Fiber Tweezers (OFTs): Based on optical fibers. Flexible, small. Their tips could be machined for generating specific optical effects [1]. Applications Figure 1: (A) Microscopic image of a polymeric Optical Fiber Tweezer tip fabricated in our laboratory using the method described in [1]. (B) Microscopic snapshot showing the simultaneous trapping phenomena of four yeast cells using this tip. Biology, Medicine and Applied Photonics, for mechanical characterization of particular biological processes, cells (e.g., Red Blood Cells elasticity quantification) [1-3] or intracellular structures (e.g., DNA molecules manipulation) [1-2]. OFT trapping forces computational model The method proposed by Barnett and Loudon was used to calculate OFT trapping forces in theory [2]. This method considers that the optical forces exerted on particles could be modelled as Lorentz forces exerted on microscopic dipoles which compose each particle. Electromagnetic Field propagation was performed using the Finite Differences Time Domain (FDTD) method implemented on the MEEP software [2]. Forces were calculated using custom-made Matlab and Python scripts. εr (A) (C) (B) Figure 2: (A) Simulation environment graphical representation (including the waveguide – fiber tip - and a 4μm curvature radius circular particle), showing components’ relative permittivity (εr) 2D spatial distribution. (B) Normalized propagated electromagnetic field intensity resultant from the FDTD method. (C) Trapping map forces (normalized) for a round particle located in several different positions (each point represents a particle position). An application case: Healthy vs. Malaria-infected Red Blood Cells (RBCs) OFT forces Computational simulations using the above method showed that, theoretically, it is possible to trap RBCs in different Malaria-infection degrees and that there is a relation between RBC infection degree and the maximum force magnitude that is possible to exert on it. (A) (B) Figure 3: (A) Magnitude force according to infection degree. (B) Maximum magnitude force vs. infection degree (Spearman; r=-1.00, p < 0.01). [1] R. Ribeiro, O. Soppera, A. Oliva, A. Guerreiro, and P. Jorge, “New trends on optical fiber tweezers,” Journal of Lightwave Technology, vol. 33, no. 16, pp. 3394–3405, 2015. [2] J. Paiva, R. Ribeiro, P. Jorge, C. Rosa, J. Cunha, “Computational modeling of red blood cells trapping using Optical Fiber Tweezers”, in: Bioengineering (ENBENG), 2017 IEEE 5th Portuguese Meeting on, IEEE, 2017, pp. 1-4. [3] J. Paiva, R. Ribeiro, P. Jorge, C. Rosa, A. Guerreiro, J. Cunha, “2D Computational Modeling of Optical Trapping Effects on Malaria-infected Red Blood Cells”, in: OSA Frontiers in Optics, OSA, 2017 [submitted]. Grant: PD/BD/135023/2017