Workshop: La radiobiologia dell’INFN Trieste, 7 February 2008

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Presentation transcript:

Workshop: La radiobiologia dell’INFN Trieste, 7 February 2008 for microdosimetry Radiobiology, nanotechnology, radiation effects on components S. Chauvie (Cuneo Hospital and INFN Genova) Maria Grazia Pia (INFN Genova) Workshop: La radiobiologia dell’INFN Trieste, 7 February 2008

Born from the requirements of large scale HEP experiments S. Agostinelli et al. GEANT4 - a simulation toolkit NIM A 506 (2003) 250-303 Courtesy CMS Collaboration Most cited (>132000 papers) “Nuclear Science and Technology” publication! 3rd most cited INFN paper Born from the requirements of large scale HEP experiments Courtesy ATLAS Collaboration Widely used also in Space science and astrophysics Medical physics, nuclear medicine Radiation protection Accelerator physics Humanitarian projects, security etc. Technology transfer to industry, hospitals… Courtesy K. Amako et al., KEK Courtesy H. Araujo and A. Howard, IC London Courtesy GATE Collaboration Courtesy R. Nartallo et al.,ESA ZEPLIN III Courtesy Borexino

Dosimetry Multi-disciplinary application environment Space science Courtesy of ESA Dosimetry Courtesy of CERN RADMON team Space science Radiotherapy Effects on components Wide spectrum of physics coverage, variety of physics models Precise, quantitatively validated physics Accurate description of geometry and materials

Multiple domains in the same software environment Complexity of software, physics and biology addressed with an iterative and incremental software process Macroscopic level calculation of dose already feasible with Geant4 develop useful associated tools Intermediate level statistical models processes for cell survival, damage etc. Microscopic level physics processes at the eV scale bio-chemical processes etc. Parallel development at all the three levels (domain decomposition)

Orticultura What’s new in Geant4? Geant4 Many “track structure” Monte Carlo codes previously developed A lot of modelling expertise embedded in these codes Each code implements one modelling approach (developed by its authors) “Stand-alone” codes, with limited application scope Legacy software technology (FORTRAN, procedural programming) Not publicly distributed Geant4 “Track structure” simulation in a general-purpose Monte Carlo system Toolkit approach: many interchangeable models (no emotional attachment to any) Advanced software technology Rigorous software process Open source, freely available, supported by an international organization Foster a collaborative spirit in the scientific community Benefit of the feedback of a wider user community

DNA Dosimetry Nanotechnology Architecture Radiobiology INFN Genova – Partly sponsored by ESA Sub-domain of Geant4 Low-Energy Electromagnetic Physics Follows the same rigorous software standards DNA Dosimetry Nanotechnology Architecture Courtesy of RADMON, CERN Not only… rather… Courtesy of A. Montanari, INFN BO Radiobiology Radiation effects on components Nanotechnology-based detectors Commonality across experimental domains Solution Commonality-differentiation Physics issues Models depend on the detailed dielectric structure of the interacting material Technology New software design technique first introduced in Monte Carlo Computational stress CPU-intensive simulation for tracks at the nm scale Modelling Multiple implementations No “one size fits all” in this domain

1st development cycle: Geant4 physics extensions Physics of interactions in water down to the eV scale Complex domain Physics: collaboration with theorists Technology: innovative design technique introduced in Geant4 (1st time in Monte Carlo) Experimental complexity as well Scarce experimental data Collaboration with experimentalists for model validation Geant4 physics validation at low energies is difficult!

Geant4-DNA physics processes S. Chauvie et al., Geant4 physics processes for microdosimetry simulation: design foundation and implementation of the first set of models, IEEE Trans. Nucl. Sci., Vol. 54, no. 6, pp. 2619-2628, Dec. 2007 Geant4-DNA physics processes Specialised processes for low energy interactions with water Models in liquid water More realistic than water vapour Theoretically more challenging Hardly any experimental data New measurements needed Status 1st b-release Geant4 8.1 2006 Full release December 2007 Further extensions in progress Current focus Experimental comparisons Particle Processes e- Elastic scattering Excitation Ionisation p Charge decrease H Charge increase He++ He+ He Toolkit: offer a wide choice among available alternative models for each process

What is behind… Policy-based class design A policy defines a class or class template interface Policy host classes are parameterised classes classes that use other classes as a parameter Advantage w.r.t. a conventional strategy pattern Policies are not required to inherit from a base class The code is bound at compilation time No need of virtual methods, resulting in faster execution New technology 1st time introduced in Monte Carlo Technology motivated by scientific requirements! Weak dependency of the policy and the policy based class on the policy interface Syntax-oriented rather than signature-oriented Highly customizable design Open to extension Policies can proliferate w/o any limitation

Geant4-DNA physics process Handled transparently by Geant4 kernel Deprived of any intrinsic physics functionality Configured by template specialization to acquire physics properties

Development metrics Investment in software technology! Open to extension: what does it mean in practice? Implementation + unit test of a new physics model ~ 5 to 7 hours* (low level C++ programming experience) No integration effort at all Investment in software technology! *…provided theorists have previously done their job by doing the theoretical calculation!

How accurate are Geant4-DNA physics models ? Both theoretical and experimental complexity in the very low energy régime Theoretical calculations must take into account the detailed dielectric structure of the interacting material Approximations, assumptions, semi-empirical models Experimental measurements are difficult Hardly any experimental data in liquid water Control of systematics, experimental constraints depending on the phase Evaluation of plausibility Only practical option at the present stage Comparison against experimental data in water vapour/ice Interesting also to study phase-related effects

Electron elastic scattering: total cross section Not all available experimental data reported… the picture would be too crowded!  Geant4 elastic  Itikawa & Mason elastic (recommended)  Itikawa & Mason total (recommended)  Danjo & Nishimura Seng et al.  Sueoka et al.  Saglam et al. Recommended total cross section smaller than elastic only one! Evident discrepancy of the experimental data Puzzle: inconsistency in recommended evaluated data from Itikawa & Mason, J. Phys. Chem. Ref. Data, 34-1, pp. 1-22, 2005. Geant4 Better agreement with some of the data sets Hardly conclusive comparison, given the experimental status…

Electron ionisation: total cross section Different phases Geant4-DNA model: liquid water Experimental data: vapour Plausible behaviour of Geant4 implementation Phase differences appear more significant at lower energies  Geant4-DNA Born ionisation  Itikawa & Mason ionisation (recommended)

Proton ionisation: total cross section Different phases Geant4 model: liquid water Experimental data: vapour All measurements performed by the same team at different accelerators and time Even data taken by the same group exhibit inconsistencies ! systematic is difficult to control in delicate experimental conditions Geant4 models look plausible Hard to discuss phase effects in these experimental conditions! Goodness-of-fit test Geant4 model incompatible with experimental data (p-value < 0.001) Compatibility w.r.t. data fit? Cramer-von Mises test: p-value = 0.1 Anderson-Darling test: p-value <0.001 PNL data  early Van de Graaff data  late Van de Graaff data  early Univ. Nebraska-Lincoln data  late Univ. Nebraska-Lincoln data  tandem Van de Graaff data Geant4 Fit to experimental data M. E. Rudd, T. V. Goffe, R. D. DuBois, L. H. Toburen, “Cross sections for ionisation of water vapor by 7-4000 keV protons”, Phys. Rev. A, vol. 31, pp. 492-494, 1985.

Charge change cross section: proton and hydrogen  Lindsay et al.  Dagnac et al.  Toburen et al.  Berkner et al. Cable  Koopman Chambers et al. Coplan et al. Large discrepancies among the data! Different phases Geant4 model: liquid Experimental data: vapour Goodness-of-fit test Geant4 model experimental data (white symbols only) Anderson-Darling test Cramer-von Mises test Kolmogorov-Smirnov test Kuiper test Watson test p-value > 0.1 from all tests Geant4 Geant4 … but some data were used to optimise the semi-empirical model!

Conclusion from comparisons Geant4-DNA models (liquid) look plausible when compared to available experimental data (vapour) More experimental data are needed In liquid water for simulation model validation In vapour and ice to study the importance of phase effects in modelling particle interactions with the medium With good control of systematic and reproducibility of experimental conditions! Hard to draw firm conclusions about phase effects Available experimental data exhibit significant discrepancies in many cases Some of these data have been already used to constrain or optimize semi-empirical models

Exploiting the toolkit For the first time a general-purpose Monte Carlo system is equipped with functionality specific to the simulation of biological effects of radiation User Interface Kernel Geometry Visualisation Geant4-DNA physics processes 

User application Microdosimetry with Geant4 in high resolution cellular phantoms at CENBG © IPB/CENBG freely usable INFN original ideas, technology and software developments in an open-source software environment

with Folkard parameters Geant4 simulation results Changing scale Parallel approach: macroscopic modelling in Geant4 Concept of dose in a cell population Statistical evaluation of radiation effects from empirical data In the same simulation environment  toolkit Human cell lines irradiated with X-rays Courtesy E. Hall Dose (Gy) Line: LQ theoretical model with Folkard parameters Points: Geant4 simulation results Survival Example: modelling cell survival fraction in a population of irradiated cells

For discussion… Geant4 proposes a paradigm shift Open source, freely available software Microdosimetry functionality in a general-purpose Monte Carlo code Availability of multiple models in the same environment Equal importance to functionality and software technology Foster collaboration within the scientific community Theoretical modelling, experimental measurements, software technology Promote feedback from users of the software Same environment for different research areas: Radiobiology Detector R&D, nanotechnology Radiation effects on components, electronics Comments and suggestions are welcome...

Acknowledgment Thanks to M. Dingfelder and D. Emfietzoglou for theoretical support W. Friedland and H. Paretzke for fruitful discussions and suggestions G. Cosmo and I. McLaren for support in the Geant4 system testing process K. Amako for support in releasing the Geant4-DNA code documentation Z. W. Bell (ORNL) for constructive advice CERN Library for providing many reference papers