Supplemental table 3 miRNA shoot Root + - miRC

Slides:

Advertisements

Similar presentations

The Build-up of the Red Sequence at z

Advertisements

P449. p450 Figure 15-1 p451 Figure 15-2 p453 Figure 15-2a p453.

Specificity of argonaute protein association with miRNA Molly Blatz Dr. Jim Carrington Dr. Sunny Gilbert.

BME 130 – Genomes Lecture 3 Sequencing technology I The bad old days.

Transcriptional profiling I – microarrays and proteomics

1 times table 2 times table 3 times table 4 times table 5 times table

Lesson 1-9 Algebra: Arithmetic Sequences

A convenient system for highly specific and sensitive detection of miRNA expression Xiangqi Li, Minjie Ni, Chaobao Zhang, Wubin Ma, Yonglian Zhang SUPPLEMENTAL.

Supplementary Table 1 – Details of clinical prostate samples used for miRNA microarray analysis. TURP: Transurethral resection of prostate, LRP: laparoscopic.

Supplemental Data Fig. 1A. Standard curves of miR-34c-5p using synthetic miRNAs.

MiRNAPredicted targetsPutative function of targets miRC1GRMZM2G029833_T01DNA binding / DNA-directed RNA polymerase miRC4 GRMZM2G171796_T01; GRMZM2G355906_T03;

Powers and roots. Square each number a) 7 b) 12 c) 20 d) 9 e) 40 a) 49 b) 144 c) 400 d) 81 e) 1600.

We are learning to write expressions using variables. (8-1)

Partial recovery Lost sample 1,000 fmols 0.1 fmols 1.0 fmols Neg. control Supplemental Fig. 1. Quality control for extraction procedures using spiked-in.

$100 $200 $300 $400 $500 $100 $200 $300 $400 $500 $100 $200 $300 $400 $500 $100 $200 $300 $400 $500 $100 $200 $300 $400 $500 $100 $200 $300.

Tables Learning Support

Last class Paper reading Data analysis Intro to Paper 1.

GDNA mix AA/(AA+GG) (A) Takeda et al., Supplemental Figure 1 (C) Sequence Height A / (A+G) Sequence Height A / (A+G) Sequence Height A / (A+G) (B) (D)

Identification of Novel Genes Coding for Small Expressed RNAs Kang Haiqi From: Science :

Author(reference) down up Supplemental data S1. differentially expressed miRNAs in selected microarray studies Murakami (14)miR-18, miR-224miR-199a, miR-195,

What comes next? Arithmetic Sequences. Write the next two terms in the sequence….. 7, 13, 19, 25, ___, ___ 3137.

Fig. 4. miR-326, miR-330, and miR-3099 bound to the GFAP 3'-UTR and regulated GFAP expression. (A) Schematic diagram of potential binding sequence (seed.

Effect of miR-29a inhibition on miRNA and SCD expression in GIFT

Multiplication table. x

Oncogene activation Transcription DNA damage MDM2 CDKN2A MDM4 p53 ATR

Additional file 5 Novel and conserved miRNAs in the halophyte Suaeda maritima identified by deep sequencing and computational predictions using the ESTs.

a b c Additional File 6 qPCR validation of miRNA expression profiles

Supplemental Figure and Tables Legends

a b SUM149PT Motility Invasion C V C V

Step 1: amplification and cloning procedures

Circulating MicroRNAs as Biomarkers of Colorectal Cancer: Results From a Genome- Wide Profiling and Validation Study María Dolores Giráldez, Juan José.

Differential expression of select miRNAs was validated in a second cohort of patients. Differential expression of select miRNAs was validated in a second.

Characterization of microRNA transcriptome in tumor, adjacent, and normal tissues of lung squamous cell carcinoma Jun Wang, MD, PhD, Zhi Li, MD, PhD,

Potential role of circulating microRNAs as a biomarker for unexplained recurrent spontaneous abortion Weibing Qin, M.D., Ph.D., Yunge Tang, M.D., Ning.

Understanding a Genome Sequence

Velizar Shivarov, Lars Bullinger Experimental Hematology

MicroRNAs of rat articular cartilage at different developmental stages identified by Solexa sequencing J. Sun, N. Zhong, Q. Li, Z. Min, W. Zhao, Q. Sun,

Profiling of a panel of radioresistant prostate cancer cells identifies deregulation of key miRNAs McDermott Niamh , Meunier Armelle , Wong Simon , Buchete.

Nelson, PT_Suppl_Table2

Kimberley Bexon, Graham Williams

SIFGD: Setaria italica Functional Genomics Database

Supplemental Figure S4. Expression changes of phased and non-phased siRNAs among the three tissues examined The expression changes of phased and non-phased.

Volume 7, Issue 1, Pages (January 2014)

Noncoding RNA roles in Gene Expression

Volume 48, Issue 5, Pages (December 2012)

Supplemental Figure 1. total n=862

Volume 22, Issue 2, Pages (January 2012)

Figure 4. Differentially expressed miRNAs and isomiRNAs between different pairs of tissues The differentially expressed miRNAs and their isomiRNAs are.

Novel p53 target genes identified by RNA-Seq, pSILAC and ChIP-Seq.

Understanding a Genome Sequence

x/÷ Numbers Year 3-4 – Multiply and divide a multiple of 10

The Small RNA Profile during Drosophila melanogaster Development

Use the graph of f to find the following limit. {image} {applet}

The species specific of 3 microRNA markers in saliva

Zheng Wang, Xueying Zhao, Yiping Hou

3 times tables.

6 times tables.

The abundance and expression of miRNAs.

Fig. 1. Expression of the five miRNAs encoded by two miRNA clusters in mouse sperm and oocytes.(A) qPCR analyses of levels of miR-16 (positive control),

Study of the specific miRNA profile during the window of implantation (WOI). Study of the specific miRNA profile during the window of implantation (WOI).

MiRNA expression profiling in adipocytes from wild-type (WT) and leptin-deficient ob/ob mice. miRNA expression profiling in adipocytes from wild-type (WT)

Enrichment of miRNAs among DPAR genes and their relative expression under dietary restriction. Enrichment of miRNAs among DPAR genes and their relative.

Last class Cloning Transformation Paper 2 intro.

Targeting eIF4E increases ZEB1 protein and mRNA levels and decreases ZEB1-targeting miR-200c and miR-141 microRNAs. Targeting eIF4E increases ZEB1 protein.

Discovered and replicated positive correlation between miR-193b

Wang Long , Mai Yan-Xia , Zhang Yan-Chun , Luo Qian , Yang Hong-Quan

HOXA11-AS acts as a ceRNA for miR-1297.

Relative abundance and expression of the 10 most abundant MAGs in the bioreactor at day 96. Relative abundance and expression of the 10 most abundant MAGs.

Derek de Rie and Imad Abuessaisa Presented by: Cassandra Derrick

Presentation transcript:

Supplemental table 3 miRNA shoot Root + - miRC1-1 23.87 96.21 36.17 41.92 miRC11-5 2.07 16.28 1.24 3.17 miRC22-1 0.61 2.18 miRC1-2 23.75 94.61 35.96 41.68 miRC11-6 16.42 miRC22-2 miRC1-3 miRC11-7 1.95 14.82 0.82 2.92 miRC23 5.24 2.47 miRC2-1 0.73 1.31 miRC12 6.33 7.41 7.73 23.64 miR398c 4.99 2.03 miRC2-2 miRC13 33.49 21.80 52.76 32.05 miRC25 0.97 miRC2-3 miRC14-1 0.85 1.16 1.44 4.02 miRC26 5.97 3.34 miRC3-1 5.84 3.20 2.06 miRC14-2 miR169t 1.58 miRC3-2 miRC15 1.10 0.52 2.44 miR169u miRC4 2.91 14.43 11.33 miR169s 36.5 20.83 8.59 2.96 miR169v miRC5 14.97 5.77 17.31 miRC17-1 4.51 1.13 miRC28 0.62 miRC6-1 1.83 1.89 1.85 2.32 miRC17-2 miRC29 1.60 1.22 miRC6-2 miRC17-3 miRC30-1 0.93 miRC7-1 4.63 5.15 8.17 miRC17-4 miRC30-2 miRC7-2 15.11 8.29 miRC17-5 miRC31 2.99 1.46 miRC7-3 miRC17-6 miRC32 miRC7-4 miRC17-7 miRC33 miRC7-5 4.75 15.40 miRC18-1 4.14 5.09 4.39 miRC34-1 0.87 miRC7-6 15.26 miRC18-2 3.77 3.78 miRC34-2 miR171o 24.96 25.29 5.36 miRC18-3 miRC34-3 miR171q miRC18-4 miRC34-4 miRC9-1 1.71 miRC19 8.86 miRC34-5 miRC9-2 miRC20 0.72 miRC34-6 miRC10 1.65 3.29 miRC21-1 1.45 1.34 miRC34-7 miRC11-1 miRC21-2 2.80 miRC34-8 miRC11-2 miRC21-3 miRC34-9 miRC11-3 miRC21-4 miRC34-10 miRC11-4 miRC21-5 miRC34-11

Supplemental table 3 continued miRNA shoot Root + - miRC34-12 0.87 miRC42-3 1.34 miRC34-13 miRC42-4 1.22 miRC35 2.33 miRC43-1 0.73 miRC36-1 2.03 miRC43-2 0.61 miRC36-2 1.60 miRC44-1 3.29 miRC36-3 miRC44-2 3.41 miRC36-4 2.18 miRC45 3.05 miRC37 107.83 miRC46 1.10 miRC38 1.02 miR169w 451.61 175.73 72.45 34.10 miRC39 1.03 miRC48 0.97 0.22 0.46 miRC40 0.93 miRC49 0.52 miRC41 miRC50 9.9 6.12 9.26 33.46 miRC42-1 1.46 miRC51-1 0.58 miRC42-2 miRC51-2 Expression profiles expressed in sequence reads per million genome reads miRNAs in fold mean the miRNAs identified by degradome sequencing