MULTISAB project: a web platform based on specialized frameworks for heterogeneous biomedical time series analysis - an architectural overview Authors:

Slides:

Advertisements

Similar presentations

The Application of Machine Translation in CADAL Huang Chen, Chen Haiying Zhejiang University Libraries, Hangzhou, China

Advertisements

Reporter: Jing Chiu Advisor: Yuh-Jye Lee /7/181Data Mining & Machine Learning Lab.

Development of a Web-based, Multimedia Database for Collection, Organization and Analysis of Biomedical Signals M.S.C.S. Problem Report Defense Lan Guo.

Alan Jović, Lea Suć, Nikola Bogunović

1 Pertemuan 13 Servers for E-Business Matakuliah: M0284/Teknologi & Infrastruktur E-Business Tahun: 2005 Versi: >

Design of Web-based Systems IS Development: lecture 10.

Research Plan of Affective learning Affective Learning Group.

DATABASE MANAGEMENT SYSTEMS 2 ANGELITO I. CUNANAN JR.

Web Application Architecture: multi-tier (2-tier, 3-tier) & mvc

Framework for Automated Builds Natalia Ratnikova CHEP’03.

Extraction of nonlinear features from biomedical time-series using HRVFrame framework Analysis of cardiac rhythm records using HRVFrame framework and Weka.

Views The architecture was specifically changed to accommodate multiple views. The used of the QStackedWidget makes it easy to switch between the different.

Csi315csi315 Client/Server Models. Client/Server Environment LAN or WAN Server Data Berson, Fig 1.4, p.8 clients network.

Topaz : A GridFTP extension to Firefox M. Taufer, R. Zamudio, D. Catarino, K. Bhatia, B. Stearn University of Texas at El Paso San Diego Supercomputer.

Random Forest-Based Classification of Heart Rate Variability Signals by Using Combinations of Linear and Nonlinear Features Alan Jovic, Nikola Bogunovic.

Overview of Part I, CMSC5707 Advanced Topics in Artificial Intelligence KH Wong (6 weeks) Audio signal processing – Signals in time & frequency domains.

Grid Chemistry System Architecture Overview Akylbek Zhumabayev.

Exploration of Instantaneous Amplitude and Frequency Features for Epileptic Seizure Prediction Ning Wang and Michael R. Lyu Dept. of Computer Science and.

Using Domain Ontologies to Improve Information Retrieval in Scientific Publications Engineering Informatics Lab at Stanford.

HRVFrame: Java-Based Framework for Feature Extraction from Cardiac Rhythm Alan Jovic and Nikola Bogunovic Faculty of Electrical Engineering and Computing,

Medical Information Retrieval: eEvidence System By Zhao Jin Mar

Application Development

Abstract A Structured Approach for Modular Design: A Plug and Play Middleware for Sensory Modules, Actuation Platforms, Task Descriptions and Implementations.

Student Submissions Integrity Diagnosis System (SSID) Min-Yen Kan.

Features Of SQL Server 2000: 1. Internet Integration: SQL Server 2000 works with other products to form a stable and secure data store for internet and.

Introduction The aim of this work is investigating the differences of Heart Rate Variability (HRV) features between normal subjects and patients suffering.

Windows Azure poDRw_Xi3Aw.

WINS Short Course 1 Sensor.com WINS Network Signal Processing Network Signal Processing Research Review SenseIT PI Meeting October 7-8, 1999 Marina Del.

DataJewel 1 : Tightly Integrating Visualization with Temporal Data Mining Mihael Ankerst, David H. Jones, Anne Kao, Changzhou Wang 1 US patent pending.

Biomedical Informatics Research Network The BIRN Architecture: An Overview Jeffrey S. Grethe, BIRN-CC 10/9/02 BIRN All Hands Meeting 2002.

Developing GRID Applications GRACE Project

The Visual LANSA Framework. Topics What is it ?  The Visual LANSA Framework is an application framework that helps you to:  Prototype  Design  Implement.

1 10 th February 2016 JRA2 SOLEIL MOTIVATIONS FOR ITS PARTICIPATION IN JRA Alain BUTEAU : Software for Controls and Data Acquisition group leader.

VIEWS b.ppt-1 Managing Intelligent Decision Support Networks in Biosurveillance PHIN 2008, Session G1, August 27, 2008 Mohammad Hashemian, MS, Zaruhi.

A WEB PLATFORM FOR ANALYSIS OF MULTIVARIATE HETEROGENEOUS BIOMEDICAL TIME - SERIES - A PRELIMINARY REPORT Alan Jovic, Davor Kukolja, Kresimir Jozic, Marko.

Project GuideBenazir N( ) Mr. Nandhi Kesavan RBhuvaneshwari R( ) Batch no: 32 Department of Computer Science Engineering.

Alan Jovic 1, Davor Kukolja 1, Kresimir Jozic 2, Mario Cifrek 1 to: 1 University of Zagreb, Faculty of Electrical Engineering.

Overview Institution 1 Institution 2 RS RS- Reputation Service Virtual Organization 1 RS Institution 3 Institution 4 RS GRID Virtual Organization 2 RS.

Petr Škoda, Jakub Koza Astronomical Institute Academy of Sciences

Semantic Graph Mining for Biomedical Network Analysis: A Case Study in Traditional Chinese Medicine Tong Yu HCLS

Biomedical time series preprocessing and expert-system based feature extraction in MULTISAB platform Alan Jovic1, Davor Kukolja1, Kresimir Friganovic1,

Building Enterprise Applications Using Visual Studio®

Connected Infrastructure

Heart Rate Variability (HRV) analysis

CIIT-Human Computer Interaction-CSC456-Fall-2015-Mr

Solutions to Clinical Data Visualization and Analysis

MATLAB Distributed, and Other Toolboxes

Golubev Alexandr, MAGIC project 2016

Outline Introduction Standards Project General Idea

Recognition of arrhythmic Electrocardiogram using Wavelet based Feature Extraction Authors Atrija Singh Dept. Of Electronics and Communication Engineering.

VI-SEEM Data Discovery Service

07/08/2018 SOLEIL PROGRESS IN PROVIDING REMOTE DATA ANALYSIS SERVICES Majid OUNSY: Data Analysis Software Project Leader.

Connected Infrastructure

BTEC NCF Dip in Comp - Unit 15 Website Development Lesson 05 – Website Performance Mr C Johnston.

DICOM Network services

Automatic Sleep Stage Classification using a Neural Network Algorithm

Optimizing the detection of characteristic waves in ECG based on exploration of processing steps combinations Authors: Krešimir Friganović, Alan Jović,

File Transfer and access

New Mexico State University

SANJAN BORA (LEAD QA ENGINEER)

N. Capp, E. Krome, I. Obeid and J. Picone

Fig. 2: Internal Components

Measures of Complexity

Providence/Pittsburgh Cross-City Collaboration June 19, 2014

20409A 7: Installing and Configuring System Center 2012 R2 Virtual Machine Manager Module 7 Installing and Configuring System Center 2012 R2 Virtual.

Enhancing Diagnostic Quality of ECG in Mobile Environment

Core Platform The base of EmpFinesse™ Suite.

Computerized Decision Support for Medical Imaging

Alan Jovic1, Kresimir Jozic2, Davor Kukolja1,

MULTISAB: A web platform for analysis of multivariate

Presentation transcript:

MULTISAB project: a web platform based on specialized frameworks for heterogeneous biomedical time series analysis - an architectural overview Authors: Krešimir Friganović, Alan Jović, Krešimir Jozić, Davor Kukolja and Mario Cifrek

MULTISAB Multiple Time Series Analysis in Biomedicine What is it: efficient and upgradeable BTS analysis system in a form of an integrative web plat-form What does it do: automatic classification of human body disorders For whom is it: medical specialists in diagnostics and early detection of various diseases Web site (Croatian): http://www.zemris.fer.hr/~ajovic/hrzz_multisab/index.html

Frameworks included Frontend: Backend: Processing: Web browser login into the system Uploading and visualization of BTS Analysis steps specification Defining outcomes of the analysis Backend: processing requests from users communication with database and data analysis hosts Processing: Frameworks for heterogeneous BTS data analysis (currently supports HRV, EEG and, partially, ECG analysis)

Architectural overview In ideal conditions, every subproject runs on different computer host(s)

Processing frameworks Data handling framework .ann, .csv, .edf/.edf+c, .txt Specialized biomedical time series analysis frameworks EEG Analysis, HRV Analysis, ECG Analysis Common signal features framework

Specialized biomedical time series analysis frameworks EEG Analysis: specific spectral features extractors used in the analysis of an EEG signal PSD for the five most common brain rhythms (α, β, γ, δ, θ) spectral entropy from PSD HRV Analysis: Frequency domain features: ultralow, low, high nad low/high ratio Time domain features: the mean NN interval length, SDNN, RMSSD, SDSD, pNNX, NNX, SDANN, SDNNindex, HRV triangular index, TINN, HRV standard deviation ratios

Database model H2 database engine 3NF

Signal visualization (1)

Signal visualization (2)

Future work ECG Analysis Expert system for feature recommendation 3D visualization of body disorders Calculation parallelization on multple physical resources Machine learning algorithms implementation Analysis reporting