Guoqian Jiang, Harold R. Solbrig, Christopher G. Chute

Slides:

Advertisements

Similar presentations

1 Copyright ©2007 Sandpiper Software, Inc. Vocabulary, Ontology & Specification Management at OMG Elisa Kendall Sandpiper Software

Advertisements

Biomedical Informatics Reference Ontologies in Biomedicine Christopher G. Chute, MD DrPH Professor and Chair, Biomedical Informatics Mayo Clinic College.

Status on the Mapping of Metadata Standards

Feedback RSG Japan 2007 | 17 February February |1 | Feed Back of RSG Meeting Japan 2007 Robert Jakob, WHO.

Consistent and standardized common model to support large-scale vocabulary use and adoption Robust, scalable, and common API to reduce variation in clinical.

VXQFQ2 Monday June 3, 2013Trillium Bridge Negotiations Meeting1.

IPY and Semantics Siri Jodha S. Khalsa Paul Cooper Peter Pulsifer Paul Overduin Eugeny Vyazilov Heather lane.

CTS2 Terminology Services

Common Terminology Services 2 (CTS2)

Copyright © 2001 College of American Pathologists SNOMED Quick Start Guide A Quick Guide to Installing and Working with SNOMED ® CT Help Exit.

LexGrid for cBIO Division of Biomedical Informatics Mayo Clinic Rochester, MN.

© Copyright 2008, Mayo Clinic College of Medicine Mayo Clinic Open Health Tools Application for Membership OHT Board Meeting, Birmingham, UK July 1, 2008.

A general-purpose text annotation tool called Knowtator is presented. Knowtator facilitates the manual creation of annotated corpora that can be used for.

LexWiki Framework & Use Cases SMW for Distributed Terminology Development Guoqian Jiang, PhD, Robert Freimuth, PhD, Haorld Solbrig Mayo Clinic NCI caBIG.

CTS 2 Status Report Presentation to HL7 Vocab WG Jan 11, 2011 Harold Solbrig Mayo Clinic.

©2013 MFMER | slide-1 Building A Knowledge Base of Severe Adverse Drug Events Based On AERS Reporting Data Using Semantic Web Technologies Guoqian Jiang,

Guoqian Jiang, MD, PhD Mayo Clinic

Biomedical Informatics Some Observations on Clinical Data Representation in EHRs Christopher G. Chute, MD DrPH, Mayo Clinic Chair, ICD11 Revision, World.

UML CASE Tool. ABSTRACT Domain analysis enables identifying families of applications and capturing their terminology in order to assist and guide system.

Mayo LexWiki: A Prototype of Collaborative Platform for Terminology/Ontology Content Development Guoqian Jiang, Ph.D. Division of Biomedical Informatics,

Model Driven Architecture (MDA) Partha Kuchana. Agenda What is MDA Modeling Approaches MDA in a NutShell MDA Models SDLC MDA Models (an Example) MDA -

NIEM-UML Profile Justin Stekervetz, NIEM PMO

International Telecommunication Union ITU-T Study Group 17, Moscow, 30 March – 8 April 2005 New Recommendations on ODP Arve Meisingset Rapporteur Q15.

Harmonization of SHARPn Clinical Element Models with CDISC SHARE Clinical Study Data Standards Guoqian Jiang, MD, PhD Mayo Clinic On behalf of CDISC CEMs.

1 Betsy L. Humphreys, MLS Betsy L. Humphreys, MLS National Library of Medicine National Library of Medicine National Institutes of Health National Institutes.

Ontology-based Convergence of Medical Terminologies: SNOMED CT and ICD-11 Institute for Medical Informatics, Statistics and Documentation, Medical University.

LexEVS 6.0 Overview Scott Bauer Mayo Clinic Rochester, Minnesota February 2011.

© 2015 Mayo Foundation for Medical Education and Research Guoqian Jiang, MD, PhD 1, Richard Kiefer 1, Luke V. Rasmussen 2 ; Huan Mo, MD, MS 3, Jennifer.

Project Proposal: CTS2 SDK Presentation to OHT Steering Committee.

A Case Study of ICD-11 Anatomy Value Set Extraction from SNOMED CT Guoqian Jiang, PhD ©2011 MFMER | slide-1 Division of Biomedical Statistics & Informatics,

3 April SOA: Services Oriented Architecture MDA: Model Driven Architecture.

Introduction to MDA (Model Driven Architecture) CYT.

HL7 Centralized Terminology Services (CTS) Harold Solbrig Mayo Clinic May 25, 2000.

Scalable Metadata Definition Frameworks Raymond Plante NCSA/NVO Toward an International Virtual Observatory How do we encourage a smooth evolution of metadata.

MPEG-7 Interoperability Use Case. Motivation MPEG-7: set of standardized tools for describing multimedia content at different abstraction levels Implemented.

NIEM-UML PROFILE Justin Stekervetz, NIEM PMO Cory Casanave, Model Driven Solutions Mark Kindl, Georgia Tech Research Institute March 2012 OMG Meeting.

CTS2 Specification Discussion Notes. CTS 2 Background Lineage (LQS, CTS, LexEVS) History (CTS 2 SFM, RFP, HL7 Adoption process) Current state – Feb 21.

LexRDF: A Semantic-Web Compatible Extension of LexGrid Cui Tao Jyotishman Pathak Harold R. Solbrig Wei-Qi Wei Christopher G. Chute Division of Biomedical.

Value Set Resolution: Build generalizable data normalization pipeline using LexEVS infrastructure resources Explore UIMA framework for implementing semantic.

WHO – IHTSDO: SNOMED CT – ICD-11 coordination: Conditions vs. Situations Stefan Schulz IHTSDO conference Copenhagen, Apr 24, 2012.

Archetype Modeling Language (AML) for CIMI UML for Archetypes Status update April 11, 2013.

Environment Change Information Request Change Definition has subtype of Business Case based upon ConceptPopulation Gives context for Statistical Program.

Dr. Darius Silingas | No Magic, Inc. Domain-Specific Profiles for Your UML Tool Building DSL Environments with MagicDraw UML.

Common Terminology Services 2 CTS 2 Submission Team Status Update HL7 Vocabulary Working Group May 17, 2011.

LexGrid Philosophy, Model and Interfaces Harold R Solbrig Division of Biomedical Statistics and Informatics Mayo Clinic.

A LexWiki-based Representation and Harmonization Framework for caDSR Common Data Elements Guoqian Jiang, Ph.D. Robert Freimuth, Ph.D. Harold Solbrig Mayo.

-KHUSHBOO BAGHADIYA.  Introduction  System Description  iCAT in use  Evolution of the system  Evolution of modeling  Evolution of features  Evolution.

Behavioral Framework Background & Terminology. Behavioral Framework: Introduction  Background..  What was the goal..

Trait ontology approach Marie-Angélique LAPORTE NCEAS June 7 th 2010.

EcoInformatics Initiative 04/18/2007 Terminology and the Semantic MediaWikiEcoterm IV – Vienna 17 – 18 April 2007 Terminology Curation with the Semantic.

HL7-NLM Project Vocabulary Component Member and Contractors Update Orlando, Jan 2005.

LexWiki Framework & Use Cases SMW for Distributed Terminology Development Guoqian Jiang, PhD, Harold Solbrig Mayo Clinic Meeting with Dr. Jakob (WHO) May.

Architecture Ecosystem SIG March 2010 Update Jacksonville FL.

Viewpoint Modeling and Model-Based Media Generation for Systems Engineers Automatic View and Document Generation for Scalable Model- Based Engineering.

Mapping International Classification for Nursing Practice (ICNP) and SNOMED CT Submitted by the ICNP Programme Team to IHTSDO Nursing Special Interest.

Frequent Criticisms too ambitious recreation of a Textbook of Medicine competing with SNOMED-CT replicates the work done elsewhere: DSM, ICPC, too academic.

The “Common Ontology” between ICD 11 and SNOMED CT

SNOMED CT E-Learning Status & Planning September Update (for ELRG)

Unified Modeling Language

ONAP Integration Through Information and Data Modeling

Model Driven Architecture

Networking and Health Information Exchange

LexRDF: An Approach for Representing Biomedical Ontologies in RDF

SHARP: Secondary Use Project 1: Data Normalization

Architecture for ICD 11 and SNOMED CT Harmonization

Object Oriented Analysis and Design

Informatics and Terminologies Committee

MDT UML2Tools 0.8 Mini-deck

Metadata The metadata contains

Social Practice of the language: Describe and share information

Presentation transcript:

Building ICD-11 Terminology Services Using the Common Terminology Services 2 (CTS2) Standard Guoqian Jiang, Harold R. Solbrig, Christopher G. Chute Mayo Clinic College of Medicine, Rochester, MN test

WHO ICD Service Categories & URI Schemes

CTS2 Standard Specification CTS2 is an OMG specification for representing, accessing, and disseminating terminological content. The CTS2 platform independent model (PIM) describes the formal model and semantics of the various components. The PIM model is rendered in the Unified Modeling Language (UML) and its specification is publicly accessible at the OMG website. As of April 2014, the CTS2 version 1.1 is the latest version released.

Objective of the study To describe the existing WHO ICD-11 content services using the CTS2 standard specifications. We profiled the WHO ICD-11 content services using the information models of Code System Catalog, Code System Version Catalog, Entity Description and Association from the CTS2 specification. We also developed a prototype of the CTS2 Wrapper Services for ICD-11.

Code System Catalog Information Model

Code System Catalog ICD-11 Foundation (http://id.who.int/icd/entity) corresponds to the Top Level of the Foundation category ICD-11 Morbidity (http://id.who.int/release/11/morbidity) corresponds to the Top Level of the ICD-11 Linerizations without minor version ICD10 (http://id.who.int/release/10) corresponds to the Top Level of the ICD10 without minor version

http://informatics.mayo.edu/rest2/project/icd11/cts2/doc

Discussion Versioning mechanism for ICD-11 Foundation would be a critical component. The external identifiers for those values annotated by external terminologies should be exposed. CTS2 specifications also have the notions of Value Set Catalog, Value Set Definition and Map Catalog, that can be leveraged by ICD- 11.

Summary CTS2 standard specification is a very useful tool for profiling the ICD-11 terminology content. The outcome produced by this profiling would potentially enrich the WHO ICD-11 content representation and enable a robust and standards-based content services to better support the ICD-11 revision applications.