SNPedia You might care if you

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Presentation transcript:

SNPedia You might care if you Work with human samples Have your own DNA analyzed (23andMe etc) ...

Single Nucleotide Polymorphism wikipedia since 2006

Single Nucleotide Polymorphism wikipedia "a wikipedia about DNA"

Where We're Going http://files.snpedia.com/reports/promethease_data/genome_Lilly_Mendel_v4_ui2.html Can read .VCF with dbSNP rs#s (and TONS of other formats) Tab delimited output also provided

Summary Text Links to PubMed Links to Related Pages Structured Information

55,000 pages like this = 1 page for each SNP with literature Pages are structured, so they can be used to make customized reports

Published Paper SNPedia: A Wiki supporting Personal Genome Annotation, Interpretation and Analysis Michael Cariaso; Greg Lennon Nucleic Acids Research Jan 1 2012 PMID 22140107

$5 $5, $2, $0

GFF3 / Gbrowse

Magnitude Numeric score of importance Community consensus score 6 Alzheimer's APOE4 5 HIV resistance 2 hmm ... interesting 1 blank, not yet classified 0 normal Community consensus score Interesting SNPs rise to the top Boring ones hide at the bottom