by Susan L. Slager, Kari G. Rabe, Sara J. Achenbach, Celine M

Slides:



Advertisements
Similar presentations
Prognostic value of miR-155 in individuals with monoclonal B-cell lymphocytosis and patients with B chronic lymphocytic leukemia by Alessandra Ferrajoli,
Advertisements

Constrained Score Statistics Identify Genetic Variants Interacting with Multiple Risk Factors in Barrett’s Esophagus  James Y. Dai, Jean de Dieu Tapsoba,
Kyung Won Kim, MD, PhD, Rachel A
Genome-wide association study identifies TH1 pathway genes associated with lung function in asthmatic patients  Xingnan Li, PhD, MS, Gregory A. Hawkins,
Figure 2. Regional plots and box plots for gene ABO top cis-SNPs whose signal was not attenuated after adjusting for the lead GWAS SNPs. (A) Observed −log10(P)
Association Analyses Identify Three Susceptibility Loci for Vitiligo in the Chinese Han Population  Xian-Fa Tang, Zheng Zhang, Da-Yan Hu, Ai-E Xu, Hai-Sheng.
Variation at 10p12.2 and 10p14 influences risk of childhood B-cell acute lymphoblastic leukemia and phenotype by Gabriele Migliorini, Bettina Fiege, Fay.
by Hugoline G. de Haan, Irene D. Bezemer, Carine J. M
MBL: mostly benign lymphocytes, but…
Whole exome sequencing in families with CLL detects a variant in Integrin β 2 associated with disease susceptibility by Lynn R. Goldin, Mary L. McMaster,
Volume 77, Issue 3, Pages (February 2010)
Genome-wide association study identifies TH1 pathway genes associated with lung function in asthmatic patients  Xingnan Li, PhD, MS, Gregory A. Hawkins,
Analysis of expressed immunoglobulin heavy chain genes in familial B-CLL by Akira Sakai, Gerald E. Marti, Neil Caporaso, Stefania Pittaluga, Jeffrey W.
Novel chromosomal imbalances in mantle cell lymphoma detected by genome-wide array-based comparative genomic hybridization by Margit Schraders, Rolph Pfundt,
by Wendy Cozen, Dalin Li, Timothy Best, David J
by Jessica A. Reese, Xiaoning Li, Manfred Hauben, Richard H
Lipopolysaccharide binding protein promoter variants influence the risk for Gram-negative bacteremia and mortality after allogeneic hematopoietic cell.
Comparison of Microsatellites Versus Single-Nucleotide Polymorphisms in a Genome Linkage Screen for Prostate Cancer–Susceptibility Loci  Daniel J. Schaid,
CXCR4 expression is associated with survival in familial chronic lymphocytic leukemia, but CD38 expression is not by Naoko Ishibe, Maher Albitar, Iman.
Expression profiling of snoRNAs in normal hematopoiesis and AML
A Locus on Chromosome 1p36 Is Associated with Thyrotropin and Thyroid Function as Identified by Genome-wide Association Study  Vijay Panicker, Scott G.
How I treat refractory CLL
by Holger Weishaupt, Mikael Sigvardsson, and Joanne L. Attema
Combined Analysis of Genome-wide Association Studies for Crohn Disease and Psoriasis Identifies Seven Shared Susceptibility Loci  David Ellinghaus, Eva.
Steven R. Brant  Clinical Gastroenterology and Hepatology 
S. Melkorka Maggadottir, MD, Jin Li, PhD, Joseph T
Weight Loss after Gastric Bypass Is Associated with a Variant at 15q26
10 Years of GWAS Discovery: Biology, Function, and Translation
Revisiting the Thrifty Gene Hypothesis via 65 Loci Associated with Susceptibility to Type 2 Diabetes  Qasim Ayub, Loukas Moutsianas, Yuan Chen, Kalliope.
Identification of a Systemic Lupus Erythematosus Susceptibility Locus at 11p13 between PDHX and CD44 in a Multiethnic Study  Christopher J. Lessard, Indra.
Complex Role of TNF Variants in Psoriatic Arthritis and Treatment Response to Anti- TNF Therapy: Evidence and Concepts  Ulrike Hüffmeier, Rotraut Mössner 
The β-Globin Recombinational Hotspot Reduces the Effects of Strong Selection around HbC, a Recently Arisen Mutation Providing Resistance to Malaria  Elizabeth.
Towfique Raj, Manik Kuchroo, Joseph M
A Joint Location-Scale Test Improves Power to Detect Associated SNPs, Gene Sets, and Pathways  David Soave, Harriet Corvol, Naim Panjwani, Jiafen Gong,
Genetic Investigations of Kidney Disease: Core Curriculum 2013
Xingnan Li, PhD, Timothy D. Howard, PhD, Siqun L
Figure 2 LocusZoom plots
Constrained Score Statistics Identify Genetic Variants Interacting with Multiple Risk Factors in Barrett’s Esophagus  James Y. Dai, Jean de Dieu Tapsoba,
Eva Ellinghaus, Philip E. Stuart, David Ellinghaus, Rajan P
A Three–Single-Nucleotide Polymorphism Haplotype in Intron 1 of OCA2 Explains Most Human Eye-Color Variation  David L. Duffy, Grant W. Montgomery, Wei.
Berta Almoguera, PhD, Lyam Vazquez, MD, Frank Mentch, PhD, Michael E
A Variant in LIN28B Is Associated with 2D:4D Finger-Length Ratio, a Putative Retrospective Biomarker of Prenatal Testosterone Exposure  Sarah E. Medland,
Lynn Petukhova, Angela M. Christiano 
Five Years of GWAS Discovery
Complex Signatures of Natural Selection at the Duffy Blood Group Locus
Pritam Chanda, Aidong Zhang, Daniel Brazeau, Lara Sucheston, Jo L
Benjamin A. Rybicki, José L. Walewski, Mary J
Association Analyses Identify Three Susceptibility Loci for Vitiligo in the Chinese Han Population  Xian-Fa Tang, Zheng Zhang, Da-Yan Hu, Ai-E Xu, Hai-Sheng.
Identifying Darwinian Selection Acting on Different Human APOL1 Variants among Diverse African Populations  Wen-Ya Ko, Prianka Rajan, Felicia Gomez, Laura.
A locus on chromosome 5 shows African ancestry–limited association with alloimmunization in sickle cell disease by Lesedi M. Williams, Zhihua Qi, Ken Batai,
Identification of a Systemic Lupus Erythematosus Susceptibility Locus at 11p13 between PDHX and CD44 in a Multiethnic Study  Christopher J. Lessard, Indra.
Manhattan plots for GWAS of LD50, µg/ml survival, 0
A Joint Location-Scale Test Improves Power to Detect Associated SNPs, Gene Sets, and Pathways  David Soave, Harriet Corvol, Naim Panjwani, Jiafen Gong,
Genome-wide association studies of asthma indicate opposite immunopathogenesis direction from autoimmune diseases  Xingnan Li, PhD, Elizabeth J. Ampleford,
Towfique Raj, Joshua M. Shulman, Brendan T. Keenan, Lori B
Genome-wide Characterization of Shared and Distinct Genetic Components that Influence Blood Lipid Levels in Ethnically Diverse Human Populations  Marc A.
A New Familial Amyotrophic Lateral Sclerosis Locus on Chromosome 16q12
Genome-wide Association Study of Platelet Count Identifies Ancestry-Specific Loci in Hispanic/Latino Americans  Ursula M. Schick, Deepti Jain, Chani J.
Scatterplot and LD map of the genotyped tagging SNPs along the TOX3/LOC region. Scatterplot and LD map of the genotyped tagging SNPs along the TOX3/LOC
Regional plot and genome browser view of 14q13.
Mesenchymal Stem Cell-Derived Vesicles Reverse Hematopoietic Radiation Damage by Sicheng Wen, Laura R Goldberg, Mark S Dooner, John L Reagan, and Peter.
Regional association plot of genotyped and imputed SNPs in proximity to rs , summarizing evidence of interaction with at least weekly heartburn or.
Master Summaries for Selected Identified Genes.
Results from a GWAS of prostate cancer in the KP population (8,399 cases and 38,745 controls), highlighting key chromosomal regions. Results from a GWAS.
Comparison of variant associations from previous reports and results from the KP GWAS meta-analysis for 105 known prostate cancer risk SNPs. Plotted values.
Initial treatment of CLL: integrating biology and functional status
Beyond GWASs: Illuminating the Dark Road from Association to Function
Vitamin D insufficiency and prognosis in chronic lymphocytic leukemia
Rafal S. Sobota, Catherine M. Stein, Nuri Kodaman, Laura B
Perception of indications for referral to a nephrologist among internal medicine residents according to the postgraduate year (PGY). Perception of indications.
Presentation transcript:

Genome-wide association study identifies a novel susceptibility locus at 6p21.3 among familial CLL by Susan L. Slager, Kari G. Rabe, Sara J. Achenbach, Celine M. Vachon, Lynn R. Goldin, Sara S. Strom, Mark C. Lanasa, Logan G. Spector, Laura Z. Rassenti, Jose F. Leis, Nicola J. Camp, Martha Glenn, Neil E. Kay, Julie M. Cunningham, Curtis A. Hanson, Gerald E. Marti, J. Brice Weinberg, Vicki A. Morrison, Brian K. Link, Timothy G. Call, Neil E. Caporaso, and James R. Cerhan Blood Volume 117(6):1911-1916 February 10, 2011 ©2011 by American Society of Hematology

Trend test P values (as −log10 values; left y axis) are shown for SNPs analyzed in GWA study. Trend test P values (as −log10values; leftyaxis) are shown for SNPs analyzed in GWA study. Recombination rate is shown across the region with the solid line (right y axis). Triangles indicate imputed SNPs and circles indicate observed SNPs. Coloring (black, light gray, white) shows the extent of LD between each SNP and rs391525. Black: r2 ≥ 0.75; light gray: 0.25 ≤ r2 < 0.75; white: r2 < 0.25. (A) Association results of the 16q24 locus across a 60-kb region between all discovery CLL cases and controls. (B) Association results of the 6q21.3 locus between the discovery familial CLL cases and controls. Susan L. Slager et al. Blood 2011;117:1911-1916 ©2011 by American Society of Hematology