The Frequency of Immunoglobulin Heavy Chain Gene and T-Cell Receptor γ-Chain Gene Rearrangements and Epstein-Barr Virus in ALK+ and ALK− Anaplastic Large.

Slides:



Advertisements
Similar presentations
Measurement of Relative Copy Number of CDKN2A/ARF and CDKN2B in Bladder Cancer by Real-Time Quantitative PCR and Multiplex Ligation-Dependent Probe Amplification.
Advertisements

Development of a Novel One-Tube Isothermal Reverse Transcription Thermophilic Helicase-Dependent Amplification Platform for Rapid RNA Detection James Goldmeyer,
CyclinD1/CyclinD3 Ratio by Real-Time PCR Improves Specificity for the Diagnosis of Mantle Cell Lymphoma Carol D. Jones, Katherine H. Darnell, Roger A.
Clinical Laboratory Analysis of Immunoglobulin Heavy Chain Variable Region Genes for Chronic Lymphocytic Leukemia Prognosis  Philippe Szankasi, David.
Long-Term Complete Regression of Nodal Marginal Zone Lymphoma Transformed Into Diffuse Large B-Cell Lymphoma With Highly Active Antiretroviral Therapy.
Immunoglobulin Gene Mutations and Frequent Use of VH1-69 and VH4-34 Segments in Hepatitis C Virus-Positive and Hepatitis C Virus-Negative Nodal Marginal.
Alexander A. Morley, Sue Latham, Michael J. Brisco, Pamela J
EGFR Mutations in Lung Adenocarcinomas
Detection of Exon 12 Mutations in the JAK2 Gene
Effectiveness of Capillary Electrophoresis Using Fluorescent-Labeled Primers in Detecting T-Cell Receptor γ Gene Rearrangements  Timothy C. Greiner, Ronald.
Tracy I. George, Joanna E. Wrede, Charles D. Bangs, Athena M
Todd S. Laughlin, Michael W. Becker, Jane L. Liesveld, Deborah A
Toward Universal Flavivirus Identification by Mass Cataloging
Kirby Siemering, Shehnaaz S. M. Manji, Wendy M
Adam Bagg  The Journal of Molecular Diagnostics 
Effectiveness of Capillary Electrophoresis Using Fluorescent-Labeled Primers in Detecting T-Cell Receptor γ Gene Rearrangements  Timothy C. Greiner, Ronald.
Detection of Clonally Restricted Immunoglobulin Heavy Chain Gene Rearrangements in Normal and Lesional Skin  Minakshi Nihal, Debra Mikkola, Gary S. Wood 
Analysis of T-Cell Clonality Using Laser Capture Microdissection and High-Resolution Microcapillary Electrophoresis  Evgeny Yakirevich, Cynthia L. Jackson,
Comparison of BIOMED-2 Versus Laboratory-Developed Polymerase Chain Reaction Assays for Detecting T-Cell Receptor-γ Gene Rearrangements  Keyur P. Patel,
Immunoguided Laser Assisted Microdissection Techniques for DNA Methylation Analysis of Archival Tissue Specimens  Franziska C. Eberle, Jeffrey C. Hanson,
Isothermal Multiple Displacement Amplification
Identification of the Tumor Cells in Peripheral T-Cell Lymphomas by Combined Polymerase Chain Reaction-Based T-Cell Receptor β Spectrotyping and Immunohistological.
Methylation-Specific Multiplex Ligation-Dependent Probe Amplification Enables a Rapid and Reliable Distinction between Male FMR1 Premutation and Full-Mutation.
B-Cell Clonality Determination Using an Immunoglobulin κ Light Chain Polymerase Chain Reaction Method  Reetesh K. Pai, Artemis E. Chakerian, John M. Binder,
Philippe Szankasi, Mohamed Jama, David W. Bahler 
Analysis of HER2 Gene Amplification Using an Automated Fluorescence in Situ Hybridization Signal Enumeration System  Rachel Stevens, Imad Almanaseer,
Silke Lassmann, Ulrike V
Protocol for the Use of Polymerase Chain Reaction in the Detection of Intraocular Large B-Cell Lymphoma in Ocular Samples  Aires Lobo, Narciss Okhravi,
Characterization of the Different BCR-ABL Transcripts with a Single Multiplex RT-PCR  Jacques Chasseriau, Jérôme Rivet, Frédéric Bilan, Jean-Claude Chomel,
Molecular Diagnostic Approach to Non-Hodgkin's Lymphoma
Fluorescence in Situ Hybridization Analysis of Immunoglobulin Heavy Chain Translocations in Plasma Cell Myeloma Using Intact Paraffin Sections and Simultaneous.
Jeung-Yeal Ahn, Katie Seo, Olga Weinberg, Scott D. Boyd, Daniel A
Molecular Typing of West Nile Virus, Dengue, and St
Rapid and Accurate Detection of Monoclonal Immunoglobulin Heavy Chain Gene Rearrangement by DNA Melting Curve Analysis in the LightCycler System  Dongsheng.
William L. Gerald, M.D., Ph.D, 1954–2008
Comprehensive and Rapid Genotyping of Mutations and Haplotypes in Congenital Bilateral Absence of the Vas Deferens and Other Cystic Fibrosis Transmembrane.
Rapid Detection of Clonal T-Cell Receptor-β Gene Rearrangements in T-Cell Lymphomas Using the LightCycler-Polymerase Chain Reaction with DNA Melting Curve.
Brenton T. Tan, Roger A. Warnke, Daniel A. Arber 
Multiplex Ligation-Dependent Probe Amplification Versus Multiprobe Fluorescence in Situ Hybridization To Detect Genomic Aberrations in Chronic Lymphocytic.
Clinical Laboratory Analysis of Immunoglobulin Heavy Chain Variable Region Genes for Chronic Lymphocytic Leukemia Prognosis  Philippe Szankasi, David.
The Human Androgen Receptor X-Chromosome Inactivation Assay for Clonality Diagnostics of Natural Killer Cell Proliferations  Michaël Boudewijns, Jacques.
Detection of Exon 12 Mutations in the JAK2 Gene
Catherine E. Keegan, Anthony A. Killeen 
Sensitive Detection of Deletions of One or More Exons in the Neurofibromatosis Type 2 (NF2) Gene by Multiplexed Gene Dosage Polymerase Chain Reaction 
Analytical Detection of Immunoglobulin Heavy Chain Gene Rearrangements in Gastric Lymphoid Infiltrates by Peak Area Analysis of the Melting Curve in the.
Capillary Electrophoresis Artifact Due to Eosin
Development of a Quantitative Real-Time Polymerase Chain Reaction Assay for the Detection of the JAK2 V617F Mutation  Elizabeth C. Wolstencroft, Katy.
Assessment of the Frequency of Allelic Imbalance in Human Tissue Using a Multiplex Polymerase Chain Reaction System  Christopher M. Heaphy, William C.
EGFR Mutations in Lung Adenocarcinomas
Immunoglobulin Heavy Chain Gene Analysis in Lymphomas
Successful Application of Hyperbranched Multidisplacement Genomic Amplification to Detect HIV-1 Sequences in Single Neurons Removed from Autopsy Brain.
Allison M. Cushman-Vokoun, Solomon Connealy, Timothy C. Greiner 
N. Scott Reading, Stephen D. Jenson, Jeffrey K. Smith, Megan S
Polymerase Chain Reaction Detection of Kaposi's Sarcoma-Associated Herpesvirus- Optimized Protocols and Their Application to Myeloma  Langxing Pan, Laura.
Ye Bang-Ce, Chu Xiaohe, Fan Ye, Li Songyang, Yin Bincheng, Zuo Peng 
The Detection of t(14;18) in Archival Lymph Nodes
Amplification Refractory Mutation System, a Highly Sensitive and Simple Polymerase Chain Reaction Assay, for the Detection of JAK2 V617F Mutation in Chronic.
T Cell Receptor γ-Chain Gene Polymerase Chain Reaction to Diagnose Central Nervous System Involvement by Cutaneous T Cell Lymphoma  Robert Taylor, Jo-Anne.
Multiplex PCR Detection of GSTM1, GSTT1, and GSTP1 Gene Variants
Danielle C. Smith, Alina Esterhuizen, Jacquie Greenberg 
The Distribution of Gene Segments in T-Cell Receptor γ Gene Rearrangements Demonstrates the Need for Multiple Primer Sets  Lyle C. Lawnicki, Ronald J.
Rapid and Accurate Detection of Monoclonal Immunoglobulin Heavy Chain Gene Rearrangement by DNA Melting Curve Analysis in the LightCycler System  Dongsheng.
A Novel Multiplexing, Polymerase Chain Reaction-Based Assay for the Analysis of Chromosome 18q Status in Colorectal Cancer  Nadina Erill, Anna Colomer,
A Novel and Rapid Method of Determining the Effect of Unclassified MLH1 Genetic Variants on Differential Allelic Expression  Sheron Perera, Brian Li,
Statistical Treatment of Fluorescence in Situ Hybridization Validation Data to Generate Normal Reference Ranges Using Excel Functions  Allison L. Ciolino,
Karen Snow-Bailey, Ph.D., 1961–2006
Validation of Roche LightCycler Epstein-Barr Virus Quantification Reagents in a Clinical Laboratory Setting  Margaret L. Gulley, Hongxin Fan, Sandra H.
BIOMED-2 Multiplex Immunoglobulin/T-Cell Receptor Polymerase Chain Reaction Protocols Can Reliably Replace Southern Blot Analysis in Routine Clonality.
Multiplex Ligation-Dependent Probe Amplification Identification of Whole Exon and Single Nucleotide Deletions in the CFTR Gene of Hispanic Individuals.
Immunohistochemistry versus Microsatellite Instability Testing for Screening Colorectal Cancer Patients at Risk for Hereditary Nonpolyposis Colorectal.
Presentation transcript:

The Frequency of Immunoglobulin Heavy Chain Gene and T-Cell Receptor γ-Chain Gene Rearrangements and Epstein-Barr Virus in ALK+ and ALK− Anaplastic Large Cell Lymphoma and Other Peripheral T-Cell Lymphomas  Brent T. Tan, Katie Seo, Roger A. Warnke, Daniel A. Arber  The Journal of Molecular Diagnostics  Volume 10, Issue 6, Pages 502-512 (November 2008) DOI: 10.2353/jmoldx.2008.080054 Copyright © 2008 American Society for Investigative Pathology and Association for Molecular Pathology Terms and Conditions

Figure 1 Histology of representative ALCL and pre-B-ALL cases. All panels shown at identical magnification. a–e: ALK+ ALCL stained with H&E (a), immunohistochemistry with anti-CD2 (b), anti-CD30 (c), in situ hybridization for EBV (d), or anti-ALK (e). f–i: ALK− ALCL stained with H&E (f), anti-CD3 (g), in situ hybridization for EBV (h), or anti-CD30 (i). j–l: pre-B-ALL stained with H&E (j), anti-CD79a (k), or anti-TdT (l). Images were captured with a Nikon Eclipse E1000 microscope (Nikon, Tokyo, Japan) using a 60×/0.95 objective lens (Nikon) and a Spot CCD camera (Diagnostic Instruments, McHenry, IL) using Spot software version 4.6 for image acquisition. The Journal of Molecular Diagnostics 2008 10, 502-512DOI: (10.2353/jmoldx.2008.080054) Copyright © 2008 American Society for Investigative Pathology and Association for Molecular Pathology Terms and Conditions

Figure 2 Electropherograms of PCRs for IGH rearrangements. The x axis indicates DNA length in nucleotides with expected product sizes above the axis. The y axis indicates relative fluorescence units. Shown are amplification products from a case of ALK− ALCL. a, b, and c represent different multiplex PCRs that use primers that bind to the FR1 (a), FR2 (b), or FR3 (c) region of IGH. This case was interpreted as positive with clonal peaks (arrows) detected by FR1, FR2, and FR3 primers. The Journal of Molecular Diagnostics 2008 10, 502-512DOI: (10.2353/jmoldx.2008.080054) Copyright © 2008 American Society for Investigative Pathology and Association for Molecular Pathology Terms and Conditions

Figure 3 Electropherograms of PCRs for TRG rearrangements. The x axis indicates DNA length in nucleotides with expected product sizes above the axis. The y axis indicates relative fluorescence units. a: A case of pre-B-ALL with a clonal peak (arrow) detected in the multiplex PCR that uses primers to detect rearrangements involving Vγ10 or Vγ1-8 of TRG. b: An ALK− ALCL case with a clonal peak (arrow) detected in the multiplex PCR that uses primers to detect rearrangements involving Vγ11 or Vγ9 of TRG. The Journal of Molecular Diagnostics 2008 10, 502-512DOI: (10.2353/jmoldx.2008.080054) Copyright © 2008 American Society for Investigative Pathology and Association for Molecular Pathology Terms and Conditions