Enzyme Annotation with Chemical Tools

Slides:



Advertisements
Similar presentations
Halogen Bonds Form the Basis for Selective P-TEFb Inhibition by DRB Sonja Baumli, Jane A. Endicott, Louise N. Johnson Chemistry & Biology Volume 17, Issue.
Advertisements

Development of Antibiotic Activity Profile Screening for the Classification and Discovery of Natural Product Antibiotics Weng Ruh Wong, Allen G. Oliver,
Origins of Metastatic Traits Sakari Vanharanta, Joan Massagué Cancer Cell Volume 24, Issue 4, Pages (October 2013) DOI: /j.ccr
Making Proteins in the Powerhouse B. Martin Hällberg, Nils-Göran Larsson Cell Metabolism Volume 20, Issue 2, Pages (August 2014) DOI: /j.cmet
Cancer Metabolism Cell Volume 148, Issue 3, (February 2012) DOI: /j.cell Copyright © 2012 Terms and Conditions Terms and Conditions.
Proteasome Inhibition by Fellutamide B Induces Nerve Growth Factor Synthesis John Hines, Michael Groll, Margaret Fahnestock, Craig M. Crews Chemistry &
In Vivo Photoswitchable Flow Cytometry for Direct Tracking of Single Circulating Tumor Cells Dmitry A. Nedosekin, Vladislav V. Verkhusha, Alexander V.
A Dumbbell-Shaped Small Molecule that Promotes Cell Adhesion and Growth Sayumi Yamazoe, Hiroki Shimogawa, Shin-ichi Sato, Jeffrey D. Esko, Motonari Uesugi.
Biocompatible Quantum Dots for Biological Applications Sandra J. Rosenthal, Jerry C. Chang, Oleg Kovtun, James R. McBride, Ian D. Tomlinson Chemistry &
DNA Topoisomerases and Their Poisoning by Anticancer and Antibacterial Drugs Yves Pommier, Elisabetta Leo, HongLiang Zhang, Christophe Marchand Chemistry.
Proteasome Inhibitors: An Expanding Army Attacking a Unique Target Alexei F. Kisselev, Wouter A. van der Linden, Herman S. Overkleeft Chemistry & Biology.
Staphylococcus aureus and Bacillus subtilis W23 Make Polyribitol Wall Teichoic Acids Using Different Enzymatic Pathways Stephanie Brown, Timothy Meredith,
LDAI-Based Chemical Labeling of Intact Membrane Proteins and Its Pulse-Chase Analysis under Live Cell Conditions Takayuki Miki, Sho-hei Fujishima, Kazuhiro.
Small Molecule Inhibitors of Clostridium difficile Toxin B-Induced Cellular Damage John Tam, Greg L. Beilhartz, Anick Auger, Pulkit Gupta, Alex G. Therien,
Cationic Fullerenes Are Effective and Selective Antimicrobial Photosensitizers George P. Tegos, Tatiana N. Demidova, Dennisse Arcila-Lopez, Haeryeon Lee,
Glycosidase Inhibition by Macrolide Antibiotics Elucidated by STD-NMR Spectroscopy Ali Sadeghi-Khomami, Michael D. Lumsden, David L. Jakeman Chemistry.
Functional Studies of Plasmodium falciparum Dipeptidyl Aminopeptidase I Using Small Molecule Inhibitors and Active Site Probes Edgar Deu, Melissa J. Leyva,
Nucleosomes and Cisplatin
Volume 22, Issue 5, Pages v-vi (May 2015)
Now Playing: Farnesol in the Biofilm
New Light on Methylthiolation Reactions
DNMT1 and Cancer: An Electrifying Link
Tailor-Made Peptide Synthetases
Nucleosomes and Cisplatin
On-Bead Library Screening Made Easier
Antibiotics: A New Hope
Foundations for Directed Alkaloid Biosynthesis
Green-Red Flashers to Accelerate Biology
Nature’s Strategy for Catalyzing Diels-Alder Reaction
An Enzyme that Regulates Ether Lipid Signaling Pathways in Cancer Annotated by Multidimensional Profiling  Kyle P. Chiang, Sherry Niessen, Alan Saghatelian,
Scratch n’ Screen for Inhibitors of Cell Migration
Chemical Proteomics of Host-Pathogen Interaction
Matthieu Desroses, Mikael Altun  Cell Chemical Biology 
Facilitating the Design of Fluorinated Drugs
Adding Specificity to Artificial Transcription Activators
Finding the Missing Code of RNA Recognition by PUF Proteins
News in Ubiquinone Biosynthesis
Activity-Based Profiling of 2-Oxoglutarate Oxygenases
Nitzan Koppel, Emily P. Balskus  Cell Chemical Biology 
Targeting the Undruggable Proteome: The Small Molecules of My Dreams
Detection of Activated, TIMP-free MMPs
A Noncanonical Path to Mechanism of Action
Bioactive Cell-Penetrating Peptides: Kill Two Birds with One Stone
No Need To Be Pure: Mix the Cultures!
How Chemoproteomics Can Enable Drug Discovery and Development
Volume 25, Issue 19, Pages R815-R817 (October 2015)
Activity-Based Profiling for Drug Discovery
Now Playing: Farnesol in the Biofilm
Macrophage Activation: On PAR with LPS
HAT Trick: p300, Small Molecule, Inhibitor
Tumor Organoids as a Pre-clinical Cancer Model for Drug Discovery
PARP Inhibitors: Staying on Target?
Making a New Turn In Matrix Metalloprotease Inhibition
Volume 21, Issue 8, Pages v-vi (August 2014)
Foundations for Directed Alkaloid Biosynthesis
Discrimination between Two Endocannabinoids
Breaking Down Order to Keep Cells Tidy
Redesigning the Architecture of the Base Pair: Toward Biochemical and Biological Function of New Genetic Sets  Andrew T. Krueger, Eric T. Kool  Chemistry.
Nature’s Strategy for Catalyzing Diels-Alder Reaction
L-DOPA Ropes in tRNAPhe
Harnessing the Antioxidant Power with ARE-Inducing Compounds
Cancer and Inflammation: An Aspirin a Day Keeps the Cancer at Bay
Volume 21, Issue 9, Pages (September 2014)
Urea Transporter Inhibitors: En Route to New Diuretics
Volume 16, Issue 3, Pages (March 2009)
Tools to Tackle Protein Acetylation
Volume 163, Issue 2, (October 2015)
Volume 21, Issue 9, Pages (September 2014)
A New Fluorescence-Based Assay for Autophagy
Volume 22, Issue 4, Pages vii-viii (April 2015)
Presentation transcript:

Enzyme Annotation with Chemical Tools Ariel G. Herman, Brent R. Stockwell  Chemistry & Biology  Volume 13, Issue 10, Pages 1013-1014 (October 2006) DOI: 10.1016/j.chembiol.2006.10.002 Copyright © 2006 Elsevier Ltd Terms and Conditions

Figure 1 Scheme for Biochemical Characterization of KIAA1363 Using Activity-Based Protein Profiling and Metabolic Profiling The use of ABPP identified a novel enzyme, KIAA1363, upregulated in cancer cells, but not in normal cells. Competitive ABPP facilitated the development of a small-molecule inhibitor of KIAA1363, AS115. Metabolic profiling was performed with AS115 to identify the endogenous substrate of KIAA1363. Further small-molecule studies with AS115 allowed for the biochemical annotation of KIAA1363 in a near-native system. Chemistry & Biology 2006 13, 1013-1014DOI: (10.1016/j.chembiol.2006.10.002) Copyright © 2006 Elsevier Ltd Terms and Conditions