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Presentation transcript:

11/22/2018 7:29:58 AM

11/22/2018 7:29:58 AM

11/22/2018 7:29:58 AM

11/22/2018 7:29:58 AM

11/22/2018 7:29:58 AM

11/22/2018 7:29:58 AM

11/22/2018 7:29:58 AM

11/22/2018 7:29:58 AM

11/22/2018 7:29:58 AM

11/22/2018 7:29:58 AM

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http://emboss.sourceforge.net/ 11/22/2018 7:29:58 AM

EMBOSS interfaces Command line: Windows, Cygwin WEB: Jemboss (needs java web start) EMBOSSGUI (needs Apache or other webserver) now installed locally in ICGEB server 11/22/2018 7:29:58 AM

11/22/2018 7:29:58 AM

http://bioinfo.icgeb.res.in/EMBOSS 11/22/2018 7:29:58 AM

EMBOSS suggested reading Chapter 12 of “Sequence analysis in a nutshell” (Markel & Léon EMBOSS quick guide “doc” directory for more details Manual Programs Tutorials 11/22/2018 7:29:58 AM

EMBOSS Command line Windows UNIX 11/22/2018 7:29:58 AM

EMBOSS for UNIX Download EMBOSS-2.8.0.tar from course website tar xvf EMBOSS-2.8.0.tar cd EMBOSS-2.8.0 ./configure make make install ENVIRONMENT SETTINGS: (can be included in .bashrc file) PATH=$PATH:/home/workshop/EMBOSS-2.8.0/emboss export PLPLOT_LIB=/home/workshop/EMBOSS-2.8.0/plplot/lib export EMBOSS_DATA=/home/workshop/EMBOSS-2.8.0/emboss/data 11/22/2018 7:29:58 AM

EMBOSSwin Copy embosswin-0.7-setup into your desktop from course webpage Double click Follow the instructions After finishing the setup Open windows shell Proceed with examples 11/22/2018 7:29:58 AM