Open Notebook Science and Cheminformatics

Slides:

Advertisements

Similar presentations

1 of 16 Information Access The External Information Providers © FAO 2005 IMARK Investing in Information for Development Information Access The External.

Advertisements

DR. STRANGEBLOG Or, how I learned to stop worrying and love classroom technology.

CHLA, Ottawa, May 2007 Presented by: Cameron Macdonald, Director, NRC Research Press.

SG KB 2009 NIGMS Workshop: Enabling Technologies for Structural Biology Section on Structural Analysis Margaret J. Gabanyi March 4, 2009 How to Use the.

The Data Lifecycle and the Curation of Laboratory Experimental Data Tony Hey Corporate VP for Technical Computing Microsoft Corporation.

Using Technology to Break the Traditional Mold of a Lab Report Ben Smith and Jared Mader Red Lion Area School District Thursday, March 29, 2007.

Open Notebook Science using Blogs and Wikis Jean-Claude Bradley E-Learning Coordinator College of Arts and Sciences Drexel University March 27, 2007 American.

Open Source/Open Notebook Science: Doing science with blogs and wikis Jan 20, 2007 Drexel University Chemistry Department.

Aims Correlation between ISI citation counts and either Google Scholar or Google Web/URL citation counts for articles in OA journals in eight disciplines.

PDF Wikispaces Blogging PBWorks You are now ready to cut the red ribbon and unveil your project to your intended audience.

The implications of Open Notebook Science and other new forms of scientific communication for Nanoinformatics Jean-Claude Bradley November 3, 2010 Nanoinformatics.

The Harvard iGEM Team Wiki and The Future of Laboratory Notebooks Kevin Shee 07/08/2007.

JournalTOCs Monitor current research by subscribing to journal TOCs.

1Computational Chemistry for Chemistry Educators - Gotwals/Sendlinger Copyright© 2007 All Rights Reserved Chapter 24 Computational Chemistry Research.

Open Notebook Science for Collaborative Drug Development Jean-Claude Bradley Sept 5, 2008 University of Manchester E-Learning Coordinator College of Arts.

Open Notebook Science: Implications for the Future of Libraries Jean-Claude Bradley E-Learning Coordinator College of Arts and Sciences Associate Professor.

Open Notebook Science: Research in Real Time Jean-Claude Bradley E-Learning Coordinator College of Arts and Sciences Associate Professor of Chemistry Drexel.

Jean-Claude Bradley E-Learning Coordinator College of Arts and Sciences Drexel University November 17, 2005 Using Blogs, Podcasts, Screencasts and Games.

The Open Access Continuum: Open Research and Altmetrics Michelle Willmers Scholarly Communication in Africa Programme CC-BY-SA.

Technology-Enriched Learning Environments Faculty Development Workshop February 21, 2013 Donna L. Pattison, PhD Instructional Professor Department of Biology.

Royal Society of Chemistry activities to develop a data repository for chemistry-specific data Aileen Day, Alexey Pshenichnov, Ken Karapetyan, Colin Batchelor,

Wien, 15 December 2008, Relevance and Impact of the Humanities The prospects opened up by Open Access Christine Kosmopoulos Centre National de la Recherche.

Integrating WebCT with audio/video Podcasting and other tools Jean-Claude Bradley E-Learning Coordinator College of Arts and Sciences Drexel University.

Using Social Media in a Boston College Classroom (and what you can learn from it) Gerald C (Jerry) Kane, Ph.D. Assistant Professor of Information Systems.

TECHNOLOGY TOOLS FOR LANGUAGE TEACHERS AND HOW THEY AID LEARNING Deborah Healey and Robert Elliott sites.google.com/site/technologytoolsforlanguage/

Tools Supporting Open-Access and Community Developed Curriculum Matt Lauer, Carleton College Sean Fox, Carleton College.

PAWS Workshop April 10, Agenda Grant administrative topics Web 2.0 –Discussion of instructional uses Copyright and open content resources –Discussion.

Introduction to the Altmetric Explorer Your altmetricexplorer.com Your name Job title.

Notes A lab report is written in the 3rd person. Most scientists are short on romance and personality, so no I's or we's, no flowery language, no ellipses,

The ISI Web of Knowledge nce/training/wok/#tab3.

WISER: Citation searching Web of Knowledge is a powerful way to access the ISI's multidisciplinary citation indexes. It allows you to discover what research.

The Benefits of Participation in the Social Web of Science Antony Williams Research Square October 30 th 2014.

Cheminformatics in Open Notebook Science Jean-Claude Bradley E-Learning Coordinator College of Arts and Sciences Associate Professor of Chemistry Drexel.

Cheminformatics and Open Notebook Science Jean-Claude Bradley E-Learning Coordinator College of Arts and Sciences Associate Professor of Chemistry Drexel.

Using Second Life to Teach Chemistry Jean-Claude Bradley E-Learning Coordinator College of Arts and Sciences Associate Professor of Chemistry Drexel University.

Google Docs & Zoho Nicole Rausch Literacy & Technology.

Formal Lab Write Up Science 10.

One publisher’s perspectives on an evolving industry Grace Baynes Nature Publishing Group October 2009.

Research and teaching with blogs and wikis Feb 23, 2007 Drexel University Chemistry Department Philadelphia Area Educational.

Processing drug discovery raw data collaboratively and openly using Open Notebook Science Jean-Claude Bradley E-Learning Coordinator College of Arts and.

Teaching Citation Metrics Nicholas Wyant Head Social Sciences Bloomington, IN November 6, 2015.

Educational Technology Tools that Work Jean-Claude Bradley E-Learning Coordinator College of Arts and Sciences Drexel University March 17, 2008 Albright.

Open Notebook Science using Blogs and Wikis: Implications for Chemical Education Jean-Claude Bradley E-Learning Coordinator College of Arts and Sciences.

UsefulChem: An Open Notebook Science Project Jean-Claude Bradley E-Learning Coordinator College of Arts and Sciences Associate Professor of Chemistry Drexel.

Cameron Neylon School of Chemistry, University of Southampton & Science and Technology Facilities Council, Rutherford Appleton Laboratory, Oxfordshire.

CREATE, IMPLEMENT AND ENJOY! Blogs,Wikis & RSS Readers.

June 26, 2003 Communication Technologies Branch, NCI 1 Demo 5 Media Formats 2 existing text formats Paper: paperback booklet can be ordered free online.

NEALLT 2016 Motivating Students with Media, Games, and Style Gettysburg College March Luba Iskold Muhlenberg College.

E-learning technology Notes about using Moodle to teach online By Benjamin Vail June 19, 2007.

Google Scholar and ShareLaTeX

Podcasting and Screencasting Lectures

What Every Chamber Executive Needs to Know About Blogging, Podcasts and Wikis C. David Gammel High Context Consulting (410)

Altmetrics What do they measure?

online taxi cab service

Podcasting, Screencasting and Gaming

Who knew I would get here from there: How I became the ChemConnector

The 8th Annual Leadership Initiative in Science Education (LISE 8)

UsefulChem project: Open source chemical research with blogs and wikis

Open Notebook Science And the Library

How to Improve the Visibility and Impact of Your Research

UsefulChem project: Open source chemical research with blogs and wikis

Teaching with Technology Idea Exchange

Open Notebook Science:

Getting your research noticed

IBM Connections Overview Presentation.

Meet the speakers: Sergey Adonin

UsefulChem project: Open source chemical research with blogs and wikis

Open Transportation Research

BIO1130 Lab 2 Scientific literature

New Platform to Support Digital Humanities in the Czech Republic

Presentation transcript:

Open Notebook Science and Cheminformatics Indiana University Cheminformatics Class Jean-Claude Bradley E-Learning Coordinator College of Arts and Sciences Associate Professor of Chemistry Drexel University March 25, 2008

Open and Closed Science Open Notebook Science (full transparency) Traditional Lab Notebook (unpublished) Traditional Journal Article Open Access Journal Article RESEARCH OPEN CLOSED TEACHING Archived Lectures Public and free online textbooks Lectures Notes public Traditional Paper Textbook F2F lectures Assigned problems public

What is the role of blogging in scientific research transparency? UsefulChem BLOG Mailing List WIKI GoogleDocs

Discussing Funding

Supporting Funding Initiatives

Highlight Popular Media Coverage

Highlight Peer-Reviewed Coverage

Announce Collaborator: Gus Rosania

Announce Collaborator: Matthias Zeller

Announce Collaborator: Phil Rosenthal

Discuss Presentations in Real Life

Discuss Presentations in Second Life

Showcase Science in New Media

Showcase Teaching in New Media Hiro Sheridan’s Molecule Rezzer takes SMILES, InChI or InChIKeys

Alerts to Broader Impact Opportunities

Science Philosophy

Where’s the Beef?

Link to Lab Notebook Page in Wiki

Link to Molecules

Link to Experimental Plan

Link to Docking Procedure (Rajarshi Guha)

Link to Docking Results (Rajarshi Guha)

Procedure Section

Link to Raw Data with JSpecView (data in JCAMP-DX format)

Conclusion is Fully Supported

Indexing the Experiments in Google

Comparing Experiments

The Most Important Section!

Results in Machine-Friendly Format

Comparing Results in a Table

Table of Contents

Recent Changes in Wiki

Tracking Versions of Wiki Pages

Comparing Versions of Wiki Pages

How are people finding our experiments?

Telling the story of the failures

Mailing List Facilitates inter-group collaboration

Open Primary Research in Drug Design using Web2 Open Primary Research in Drug Design using Web2.0 tools (blogs, wikis, Second Life, mailing lists) Rajarshi Guha Indiana U Tsu-Soo Tan Nanyang Inst. Docking JC Bradley Drexel U Synthesis Phil Rosenthal UCSF (malaria) Dan Zaharevitz NCI (tumors) Testing

Gus Rosania’s Notebook

Cameron Neylon’s Notebook

Automation in UsefulChem

CMLRSS feed on Bioclipse

Graphical Mining of Data with JSpecView usefulchem.wikispaces.com/Exp070 (48h 7 min)

Using ExcelVBA to automate kinetics analysis

Specify NMR regions and internal standard

NMR spectra of monitoring samples calculated

Reaction profile plotted automatically

Next Step: Reading JCAMP-DX files in Second Life

Where is Science headed? WE ARE HERE