attP region and attB regions

Slides:



Advertisements
Similar presentations
William S. Klug Michael R. Cummings Charlotte A
Advertisements

Bacterial conjugation is the transfer of genetic material (conjugative plasmid) between bacteria through direct cell to cell contact, or through a bridge-like.
Recombination. Three possible outcomes of site-specific inversion.
Retroviruses and Retroposons Chapter Introduction Figure 22.1.
Methods in the Development of Stable, Unmarked Recombinant BCG Vaccine Strains March 26, 2013 Prepared by: Charles Bourne Strictly Private and Confidential.
Microbial Genetics (Micr340) Lecture 10 Lytic Bacteriophages (II)
Bacteriophages ( a.k.a. Phages) Viruses that target bacteria Virus defining characteristics: parasitic entities Nucleic acid molecules protected by protein.
Chapter 8 The Genetics of Bacteria and Their Viruses
Lysogeny: Phage Entry into Bacterial Hosts Bobby Chaggar Yordanos Teferra.
Bacteria Transformation
The Gateway® Cloning System Introduction to the Gateway® System Contents Defining Gateway® technology. Advantages of Gateway® cloning. Ways to enter the.
Genetic transfer and recombination
Bacterial Genetics. Bacterial Genome  Chromosome:  Plasmid: Plasmids are extrachromosomal genetic elements capable of autonomous replication. An episome.
Do Now 3/20 OBJECTIVES: Define plasmid and restriction enzyme. Identify where a restriction enzyme will cut a DNA sequence. Explain how REs and plasmids.
The exchange of Genetic Material between bacteria or How bacteria acquire resistance to antimicrobial agents in nature.
AP Biology Chapter 18. Bacterial Genetics.
Recombination and Genetic Engineering Microbiology.
Copyright © 2002 Pearson Education, Inc., publishing as Benjamin Cummings Fig. 18.2a & b.
Restriction Enzymes. Restriction Endonucleases Also called restriction enzymes “molecular scissors” discovered in in bacteria Restriction enzymes is an.
Specialized transduction Mozhan Haji Ghaffari Teacher: Dr. Ashraf Hosseini.
CHAPTER 5 The Genetics of Bacteria and Their Viruses CHAPTER 5 The Genetics of Bacteria and Their Viruses Copyright 2008 © W H Freeman and Company.
Lecture 9 Site Specific Recombination and Transposition Quiz 5 due today at 4 PM.
Fig. 5-2 Plating bacteria and growing colonies. Commonly used genetic markers Prototrophic markers: wild-type bacteria are prototrophs (grow on minimal.
Mysterious Sequence Repeats in Phage Genomes AKHIL GARG BNFO 301 APRIL 30, 2015.
 What is genetic material? Griffith experiment 1928.
The Genetics of Bacteria and Their Viruses
Bacterial Genetics & Transformation
Chapter 9 Genetics of Bacteria and Their Viruses: Transduction and phage genetics Jones and Bartlett Publishers © 2005.
Gene Transfer. Gene transfer in bacteria There are three types of gene transfer 1.Transformation 2.Conjugation 3.Transduction.
Determine the sequence of genes along a chromosome based on the following recombination frequencies A-C 20% A-D 10% B-C 15% B-D 5%
Chapter 20: Part 1 DNA Cloning and Plasmids
A Molecular Toolkit AP Biology Fall The Scissors: Restriction Enzymes  Bacteria possess restriction enzymes whose usual function is to cut apart.
Bacteria Genetics Bacteria Genetics Introduction Chromosome (bacteria are haploid; in other words, they have a single chromosome) Chromosome (bacteria.
Bacterial Genetics.
©2000 Timothy G. Standish Colossians 1:16, 17 16For by him were all things created, that are in heaven, and that are in earth, visible and invisible, whether.
Types of cloning vectors 1. Plasmids: Autonomously replicating circular DNA molecules. 2.Bacteriophage: Small viruses that infect bacteria cells. 3. Vectors.
Chapter 13-2 & 13-3: Manipulating DNA & Cell Transformation
nome/program.html.
Microbial Genetics Glossary 1. Strain or clone: A clone is a population of cells that are genetically ideal pure culture. 2. Genome : All the genes present.
IDENTIFICATION OF HIGHLY CONSERVED BACILLUS ORFS OF UNKNOWN FUNCTION.
PHANTOME: Phage Annotation Tools And Methods Rob Edwards San Diego State University Argonne National Laboratory.
E.Coli AS MODERN VECTOR.
Colossians 1:16, For by him were all things created, that are in heaven, and that are in earth, visible and invisible, whether they be thrones, or.
CHAPTER 12 DNA Technology and the Human Genome
Volume 11, Issue 11, Pages (November 2004)
13-3 Cell Transformation Interactive pgs. 329.
Gene Isolation and Manipulation
Biotechnology: Part 1 DNA Cloning, Restriction Enzymes and Plasmids
This Week Score Conjugation Plates,
RFLP “Restriction Fragment Length Polymorphism” Basic idea: Uses:
This Week Score Conjugation Plates,
Chapter 13.3 Cell Transformation.
Volume 49, Issue 2, Pages (January 2013)
Volume 19, Issue 4, Pages (August 2005)
Lecture 11 LTRs Properties of Chromatin Telomeres.
Chapter 15 Homologous and Site-Specific Recombination
This Week Score Conjugation Plates,
The Genetics of Bacteria
Integrons and gene cassettes in clinical isolates of co-trimoxazole-resistant Gram- negative bacteria  M. Grape, A. Farra, G. Kronvall, L. Sundström  Clinical.
The Life Cycle of a Filamentous Phage
This Week Score Conjugation Plates,
Transposable Elements
FLP-mediated removal of extraneous sequences (A) Schematic representation of FLP-mediated removal of extraneous sequences. FLP-mediated removal of extraneous.
Contemporary Phage Biology: From Classic Models to New Insights
Volume 11, Issue 11, Pages (November 2004)
This Week Score Conjugation Plates,
A two-step method to flexibly engineer the fly genome.
E.Coli AS MODERN VECTOR.
New Tools for Genome Modification in Human Embryonic Stem Cells
Integron structure and gene capture mechanism.
Presentation transcript:

attP region and attB regions Yordanos Teferra

attP region and attB regions Yordanos Teferra

Article 1 - "M. smegmatis involves an integrase-mediated site- Hatful, Graham. "Characterization of the Mycobacteriophage L5 Attachment Site, attp." - attP sites are located in intergenic region around an integrase gene. An integrase gene needs to be present to have an attP region within a phage and to have site-specific recombination event between attP site and attB site - "M. smegmatis involves an integrase-mediated site- specific recombination event between specific attachment sites on the phage genome (attP) and on the bacterial chromosome (attB;)"

Article 2 - Bryan Julien "Characterization of the Integrase Gene and Attachment Site for the Myxococcus xanthusBacteriophage Mx9" - attB region need to be only one in a bacteria and mostly have tRNA gene that they are located in. These region usually are the same sequence as the phage (attP) that is attaching into the bacteria. "Both phages contain attP within the int gene and integrate within a tRNA gene."

Experiment

attB

Importance These findings add on to the idea of where attP sites and attB sites are located.

Article 1 - "M. smegmatis involves an integrase-mediated site- Hatful, Graham. "Characterization of the Mycobacteriophage L5 Attachment Site, attp." - attP sites are located in intergenic region around an integrase gene. An integrase gene needs to be present to have an attP region within a phage and to have site-specific recombination event between attP site and attB site - "M. smegmatis involves an integrase-mediated site- specific recombination event between specific attachment sites on the phage genome (attP) and on the bacterial chromosome (attB;)"

Article 2 - Bryan Julien "Characterization of the Integrase Gene and Attachment Site for the Myxococcus xanthusBacteriophage Mx9" - attB region need to be only one in a bacteria and mostly have tRNA gene that they are located in. These region usually are the same sequence as the phage (attP) that is attaching into the bacteria. "Both phages contain attP within the int gene and integrate within a tRNA gene."

Experiment

attB

Importance These findings add on to the idea of where attP sites and attB sites are located.