Pathway Collages Suzanne Paley Pathway Tools Workshop 2018

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Presentation transcript:

Pathway Collages Suzanne Paley Pathway Tools Workshop 2018

What is a Pathway Collage? Web Application (but accessible from both web and desktop PTools) User-specified set of Pathway Diagrams Zoomable, Editable, Customizable Generate High-Quality Images for Publications and Presentations Overlay Omics Data Implemented in JavaScript using Cytoscape.js

Operations Adjust position of pathways, metabolites, etc. Edit labels Customize appearance of nodes, edges Show connections between pathways Merge duplicate metabolites, delete entities Add pathways involving metabolite Highlight metabolites, reactions, enzymes of interest Show/Hide Omics Data Tooltips provide links to BioCyc/PTools pages Save/Reload/Export to PNG

Accessing Pathway Collage App

Pathway Collage from a SmartTable

Demo