Use of deuterium labeling in NMR: overcoming a sizeable problem

Slides:



Advertisements
Similar presentations
11-7 Areas and Volumes of Similar Solids. Problem 1: Identifying Similar Solids Are the two rectangular prisms similar? If so what is the scale factor.
Advertisements

Structure Determination by NMR CHY 431 Biological Chemistry Karl D. Bishop, Ph.D. One Dimensional NMR Two Dimensional NMR Resonance Assignment Procedures.
-1/2 E +1/2 low energy spin state
The number of protons yielding correlations in a 2D NOESY spectrum quickly overwhelms the space available on A 2D map. 15N labeling can help simplify the.
Spot number ; H1 Supporting Information Figure 3. MS spectra of the identified proteins.
The Pulse FT NMR Experiment equilibration 90º pulse detection of signals Experiment (t) Data Analysis Fourier Transform Time domain (t)
These 2D methods work for proteins up to about 100 amino acids, and even here, anything from amino acids is difficult. We need to reduce the complexity.
Volume 3, Issue 1, Pages (January 1995)
Volume 107, Issue 12, Pages (December 2014)
Volume 12, Issue 2, Pages (February 2005)
Volume 100, Issue 1, Pages (January 2000)
Important port for SHIP-1 at Dok-3
NMR Spectroscopy – Part 2
Solid-State NMR signal enhancement via DNP from endogenous flavin.
A Distance Ruler for RNA Using EPR and Site-Directed Spin Labeling
Volume 14, Issue 3, Pages (March 2006)
Application of NMR in Structural Proteomics
Volume 105, Issue 2, Pages (July 2013)
Volume 21, Issue 12, Pages (December 2013)
NMR Spectroscopy Question and Answer Session
C2 Can Do It, Too Cell Volume 121, Issue 2, Pages (April 2005)
Volume 23, Issue 11, Pages (November 2015)
Volume 13, Issue 7, Pages (July 2005)
Volume 17, Issue 1, Pages (January 2005)
Kurt Wüthrich and NMR of Biological Macromolecules
Identification of TOR Signaling Complexes
Volume 10, Issue 6, Pages (June 1999)
Volume 18, Issue 6, Pages (June 2005)
An RNA-Binding Chameleon
11.7: Surface Area and Volume for Similar Solids
Volume 9, Issue 11, Pages (November 2001)
From Protein-RNA Predictions toward a Peptide-RNA Code
Solution Structure of a Unique G-Quadruplex Scaffold Adopted by a Guanosine-Rich Human Intronic Sequence  Vitaly Kuryavyi, Dinshaw J. Patel  Structure 
Volume 96, Issue 1, Pages (January 2009)
Volume 12, Issue 9, Pages (September 2005)
James J Chou, Honglin Li, Guy S Salvesen, Junying Yuan, Gerhard Wagner 
Solution Structure of a Telomeric DNA Complex of Human TRF1
CHY 431 Biological Chemistry
Structure of Bax  Motoshi Suzuki, Richard J. Youle, Nico Tjandra  Cell 
Volume 113, Issue 12, Pages (December 2017)
Volume 114, Issue 5, Pages (March 2018)
Nuclear Magnetic Resonance Structure of a Novel Globular Domain in RBM10 Containing OCRE, the Octamer Repeat Sequence Motif  Bryan T. Martin, Pedro Serrano,
Volume 2, Issue 11, Pages (November 1994)
Volume 21, Issue 12, Pages (December 2013)
Plagiarism and Pathogenesis
Comparison of X-Ray Crystal Structure of the 30S Subunit-Antibiotic Complex with NMR Structure of Decoding Site Oligonucleotide-Paromomycin Complex  Stephen.
Volume 17, Issue 1, Pages (January 2005)
Structural Basis for the Recognition of Methylated Histone H3K36 by the Eaf3 Subunit of Histone Deacetylase Complex Rpd3S  Chao Xu, Gaofeng Cui, Maria.
Conspiracy Theory Cell
Volume 10, Issue 6, Pages (June 1999)
Volume 7, Issue 7, Pages (July 2000)
The suppressors of cytokine signaling (SOCS) proteins
Volume 11, Issue 8, Pages (August 2003)
Chapter 16. 3D Experiments.
Volume 35, Issue 3, Pages (August 2009)
Allosteric Control of Syntaxin 1a by Munc18-1: Characterization of the Open and Closed Conformations of Syntaxin  Damian Dawidowski, David S. Cafiso 
Phosphatase Specificity and Pathway Insulation in Signaling Networks
Unmasking the Annexin I Interaction from the Structure of Apo-S100A11
Kalyan S. Chakrabarti, Jess Li, Ranabir Das, R. Andrew Byrd  Structure 
Proteins Have Too Many Signals!
Volume 4, Issue 2, Pages (February 1996)
Mark A Lemmon, Kathryn M Ferguson, Joseph Schlessinger  Cell 
Benjamin Misselwitz, Oliver Staeck, Tom A Rapoport  Molecular Cell 
Volume 10, Issue 5, Pages (May 2002)
Volume 102, Issue 1, Pages (January 2012)
Insights into Programmed Cell Death through Structural Biology
Dynamic Short Hydrogen Bonds in Histidine Tetrad of Full-Length M2 Proton Channel Reveal Tetrameric Structural Heterogeneity and Functional Mechanism 
Volume 86, Issue 3, Pages (March 2004)
Emmanuel O. Awosanya, Alexander A. Nevzorov  Biophysical Journal 
Volume 19, Issue 10, Pages (October 2011)
Presentation transcript:

Use of deuterium labeling in NMR: overcoming a sizeable problem Michael Sattler, Stephen W Fesik  Structure  Volume 4, Issue 11, Pages 1245-1249 (November 1996) DOI: 10.1016/S0969-2126(96)00133-5

Figure 1 Theoretical considerations for the use of deuterium labeling. (a) Suppression of spin diffusion by fractional deuteration of side chains in larger proteins. Due to the elimination of competing relaxation pathways in the network of dipolar coupled protons, relaxation rates of the remaining protons (e.g. HN) are greatly reduced which leads to smaller linewidths and higher signal-to-noise. (b) The dipolar interaction between 13C or 15N and an attached proton, which is proportional to the square of the gyromagnetic ratios, is significantly reduced by replacing the proton with deuterium leading to smaller relaxation rates. Structure 1996 4, 1245-1249DOI: (10.1016/S0969-2126(96)00133-5)

Figure 2 HN, Cα projections from three-dimensional HNCA experiments. The projections were obtained from spectra recorded on: (a) uniformly [15N, 13C]-labeled Shc phosphotyrosine-binding (PTB) domain and (b) 75 % 2H, uniformly [15N, 13C]-labeled Shc PTB domain complexed with an unlabeled tyrosine-phosphorylated 12-mer peptide. Structure 1996 4, 1245-1249DOI: (10.1016/S0969-2126(96)00133-5)

Figure 3 Two-dimensional HN, HN NOESY planes. Results obtained on an (a) 15N-labeled RNA methyltransferase, ErmAm, with a mixing time of 80ms and (b) uniformly 2H-, 15N-labeled ErmAm with a mixing time of 200ms. Structure 1996 4, 1245-1249DOI: (10.1016/S0969-2126(96)00133-5)