Automation in clinical bacteriology: what system to choose?

Slides:



Advertisements
Similar presentations
Models for the organisation of hospital infection control and prevention programmes B. Gordts Clinical Microbiology and Infection Volume 11, Pages
Advertisements

O. Dauwalder, L. Landrieve, F. Laurent, M. de Montclos, F
Laboratory diagnosis and biosafety issues of biological warfare agents
C.-S. Lee, J.-H. Lee  Clinical Microbiology and Infection 
P.-Y. Lévy  Clinical Microbiology and Infection 
Matrix-assisted laser desorption ionization time-of-flight mass spectrometry, a revolution in clinical microbial identification  A. Bizzini, G. Greub 
Changes in antimicrobial resistance, serotypes and genotypes in Streptococcus pneumoniae over a 30-year period  J. Liñares, C. Ardanuy, R. Pallares, A.
Gut bacterial microbiota and obesity
Salvage therapy for multidrug-resistant tuberculosis
Varicella vaccination: a laboured take-off
S. Wagenpfeil, A. Neiss, K. Banz, P. Wutzler 
Migrant health—a cause for concern?
Clinical characteristics of Haemophilus influenzae meningitis in Denmark in the post- vaccination era  T.I. Pedersen, M. Howitz, C. Østergaard  Clinical.
C.-S. Lee, J.-H. Lee  Clinical Microbiology and Infection 
J.-P. Van geertruyden  Clinical Microbiology and Infection 
O. Clerc, G. Greub  Clinical Microbiology and Infection 
R. Cantón  Clinical Microbiology and Infection 
Genital Chlamydia trachomatis infections
E. Cambau, M. Drancourt  Clinical Microbiology and Infection 
Louis Pasteur, from crystals of life to vaccination
How to evaluate and predict the ecologic impact of antibiotics: the pharmaceutical industry view from research and development  R. Bax  Clinical Microbiology.
Surveillance of Legionnaires’ disease in Austria
Environmental surveillance and other control measures in the prevention of nosocomial fungal infections  P. Muñoz, A. Burillo, E. Bouza  Clinical Microbiology.
Vector control: a cornerstone in the malaria elimination campaign
Training for the infectious diseases speciality in Norway
Laboratory diagnosis and biosafety issues of biological warfare agents
Salvage therapy for multidrug-resistant tuberculosis
Clinical microbiologists facing an anthrax alert
Aerococcus: an increasingly acknowledged human pathogen
Comparison of clinical and environmental isolates of Legionella pneumophila obtained in the UK over 19 years  T.G. Harrison, N. Doshi, N.K. Fry, C.A.
Levofloxacin in the treatment of ventilator-associated pneumonia
Metagenomics and probiotics
Automation in clinical bacteriology: what system to choose?
Prevalence of colonisation with third-generation cephalosporin-resistant Enterobacteriaceae in ICU patients of Heidelberg University Hospitals  H. von.
Detection of, and frequent co-infection with, human bocavirus in faecal specimens from children in Wuhan, China  Y. Huang, P. Mao, H. Wang  Clinical Microbiology.
Laboratory diagnosis of Clostridium difficile disease
A case of pleurisy associated with antibodies to Rickettsia conorii
J. Garau  Clinical Microbiology and Infection 
T.M. File  Clinical Microbiology and Infection 
Update on antifungal resistance in Aspergillus and Candida
Harmonised monitoring of antimicrobial resistance in Salmonella and Campylobacter isolates from food animals in the European Union  S. Bronzwaer  Clinical.
Abstracts cont. Clinical Microbiology and Infection
Pandemic lineages of extraintestinal pathogenic Escherichia coli
Reducing antibiotic use in influenza: challenges and rewards
A.P. Underwood, J. Green  Clinical Microbiology and Infection 
H. Leblebicioglu, C. Eroglu  Clinical Microbiology and Infection 
C. Gagliotti, L. Nobilio, M.L. Moro 
An after-hours clinical liaison blood culture service—is it worth it?
G.M. Rossolini, E. Mantengoli  Clinical Microbiology and Infection 
Statin use and clinical outcomes among pneumonia patients
Examination of specimens for mycobacteria in clinical laboratories in 21 countries: a 10- year review of the UK National Quality Assessment Scheme for.
O. Clerc, G. Greub  Clinical Microbiology and Infection 
First isolation of Conidiobolus sp
Tuberculosis in HIV-infected patients: a comprehensive review
K. Kaier, N.T. Mutters, U. Frank  Clinical Microbiology and Infection 
O. Dauwalder, L. Landrieve, F. Laurent, M. de Montclos, F
F.J. Pastor, J. Guarro  Clinical Microbiology and Infection 
The atypical pneumonias: clinical diagnosis and importance
Abstracts Clinical Microbiology and Infection
Modelling during an emergency: the 2009 H1N1 influenza pandemic
D. Baud, C. Kebbi, J.-P. Külling, G. Greub 
Are we losing the fight against malaria one more time?
J.L. Balcázar  Clinical Microbiology and Infection 
Test results: characterising the antimicrobial activity of daptomycin
G.C. Schito  Clinical Microbiology and Infection 
Three years experience of real-time PCR for the diagnosis of Q fever
Impact of antibiotic restrictions: the patient's perspective
Comparative study of pediculicidal effect of medical plants
CMI readers' survey Clinical Microbiology and Infection
The future of diagnostic bacteriology
Presentation transcript:

Automation in clinical bacteriology: what system to choose? G. Greub, G. Prod’hom  Clinical Microbiology and Infection  Volume 17, Issue 5, Pages 655-660 (May 2011) DOI: 10.1111/j.1469-0691.2011.03513.x Copyright © 2011 European Society of Clinical Infectious Diseases Terms and Conditions

Fig. 1 Partition (%) of the workload in our bacteriology laboratory at the sample reception unit. Time was assessed by self‐reporting ongoing activity at 15‐min intervals; activities had to be assigned to one of the seven categories presented on the graph. Note that as much as 24% of technician time is devoted to the inoculation of agar plates and broths. LIS, laboratory information system; TB, tuberculosis. Clinical Microbiology and Infection 2011 17, 655-660DOI: (10.1111/j.1469-0691.2011.03513.x) Copyright © 2011 European Society of Clinical Infectious Diseases Terms and Conditions

Fig. 2 Agar plates inoculated (a) with Previ‐Isola, (b) with WASP, (c) withInoqula, and (d) manually. Note that isolated colonies were generally obtained, although high inocula were tested (about 106 bacteria/mL). The use of the Previ‐Isola comb leads to circular semiquantitative inoculation (a), whereas, with WASP and Inoqula, both single‐streaking (b, d) and four‐quadrant inoculation (not shown) may be performed. Only 1 μL of urine was inoculated with the Inoqula bead (c), whereas 10 μL of the same urine was inoculated manually (d). Note that automated inoculation allow us to obtain more isolated colonies than manual inoculation, at least with Previ‐Isola and Inoqula (Rice and Baruch, 109th ASM, 2009, Poster C064; Sturm et al., 20th ECCMID, 2010, Poster 1766). Clinical Microbiology and Infection 2011 17, 655-660DOI: (10.1111/j.1469-0691.2011.03513.x) Copyright © 2011 European Society of Clinical Infectious Diseases Terms and Conditions

Fig. 3 Partition in percentage of the arrival of the specimen for processing (working hours 08:00–17:00). Clinical Microbiology and Infection 2011 17, 655-660DOI: (10.1111/j.1469-0691.2011.03513.x) Copyright © 2011 European Society of Clinical Infectious Diseases Terms and Conditions