A Dynamics Criterion to Determine Allostery

Slides:

Advertisements

Similar presentations

Membrane Modulates Affinity for Calcium Ion to Create an Apparent Cooperative Binding Response by Annexin a5 Jacob W. Gauer, Kristofer J. Knutson, Samantha.

Advertisements

How Do Thermophilic Proteins and Proteomes Withstand High Temperature? Lucas Sawle, Kingshuk Ghosh Biophysical Journal Volume 101, Issue 1, Pages

Mechanical Stability and Reversible Fracture of Vault Particles Aida Llauró, Pablo Guerra, Nerea Irigoyen, José F. Rodríguez, Núria Verdaguer, Pedro J.

On the Thermodynamic Efficiency of Ca2+-ATPase Molecular Machines Anders Lervik, Fernando Bresme, Signe Kjelstrup, J. Miguel Rubí Biophysical Journal Volume.

Analysis of Kinetic Intermediates in Single-Particle Dwell-Time Distributions Daniel L. Floyd, Stephen C. Harrison, Antoine M. van Oijen Biophysical Journal.

Counter-Intuitive Stochastic Behavior of Simple Gene Circuits with Negative Feedback Tatiana T. Marquez-Lago, Jörg Stelling Biophysical Journal Volume.

Inhibitor Binding Increases the Mechanical Stability of Staphylococcal Nuclease Chien-Chung Wang, Tian-Yow Tsong, Yau-Heiu Hsu, Piotr E. Marszalek Biophysical.

Calcium Involvement in Regulation of Neuronal Bursting in Disinhibited Neuronal Networks: Insights from Calcium Studies in a Spherical Cell Model Pawel.

Structure and Dynamics of ER: Minimal Networks and Biophysical Constraints Congping Lin, Yiwei Zhang, Imogen Sparkes, Peter Ashwin Biophysical Journal.

The Dynamics and Mechanics of Endothelial Cell Spreading Cynthia A. Reinhart-King, Micah Dembo, Daniel A. Hammer Biophysical Journal Volume 89, Issue 1,

Calibration of Optical Tweezers for In Vivo Force Measurements: How do Different Approaches Compare? Yonggun Jun, Suvranta K. Tripathy, Babu R.J. Narayanareddy,

Tryptophan-Lipid Interactions in Membrane Protein Folding Probed by Ultraviolet Resonance Raman and Fluorescence Spectroscopy Katheryn M. Sanchez, Guipeun.

High-Resolution Waveguide THz Spectroscopy of Biological Molecules N. Laman, S. Sree Harsha, D. Grischkowsky, Joseph S. Melinger Biophysical Journal Volume.

Elucidating the Locking Mechanism of Peptides onto Growing Amyloid Fibrils through Transition Path Sampling Marieke Schor, Jocelyne Vreede, Peter G. Bolhuis.

Phase Resetting Curves Allow for Simple and Accurate Prediction of Robust N:1 Phase Locking for Strongly Coupled Neural Oscillators Carmen C. Canavier,

Molecular Model of a Cell Plasma Membrane With an Asymmetric Multicomponent Composition: Water Permeation and Ion Effects Robert Vácha, Max L. Berkowitz,

Functional Analysis of the Neurofibromatosis Type 2 Protein by Means of Disease- Causing Point Mutations Renee P. Stokowski, David R. Cox The American.

Is the Cross-Bridge Stiffness Proportional to Tension during Muscle Fiber Activation? Barbara Colombini, Marta Nocella, M. Angela Bagni, Peter J. Griffiths,

A Multiscale Red Blood Cell Model with Accurate Mechanics, Rheology, and Dynamics Dmitry A. Fedosov, Bruce Caswell, George Em Karniadakis Biophysical Journal.

Yield Strength of Human Erythrocyte Membranes to Impulsive Stretching Fenfang Li, Chon U Chan, Claus Dieter Ohl Biophysical Journal Volume 105, Issue 4,

Thermal Fluctuations of Red Blood Cell Membrane via a Constant-Area Particle- Dynamics Model Gianluca Marcelli, Kim H. Parker, C. Peter Winlove Biophysical.

X-Ray Absorption Spectroscopy of Dinuclear Metallohydrolases David L. Tierney, Gerhard Schenk Biophysical Journal Volume 107, Issue 6, Pages

Location, Structure, and Dynamics of the Synthetic Cannabinoid Ligand CP-55,940 in Lipid Bilayers Tomohiro Kimura, Kejun Cheng, Kenner C. Rice, Klaus Gawrisch.

Cytoskeletal Polymer Networks: Viscoelastic Properties are Determined by the Microscopic Interaction Potential of Cross-links O. Lieleg, K.M. Schmoller,

Contrast Inversion in the Epifluorescence of Cholesterol-Phospholipid Monolayers T.M. Okonogi, H.M. McConnell Biophysical Journal Volume 86, Issue 2, Pages.

A Hydrodynamic Model for Hindered Diffusion of Proteins and Micelles in Hydrogels Ronald J. Phillips Biophysical Journal Volume 79, Issue 6, Pages

Photochemical Reaction Dynamics of the Primary Event of Vision Studied by Means of a Hybrid Molecular Simulation Shigehiko Hayashi, Emad Tajkhorshid, Klaus.

Lever-Arm Mechanics of Processive Myosins Yujie Sun, Yale E. Goldman Biophysical Journal Volume 101, Issue 1, Pages 1-11 (July 2011) DOI: /j.bpj

Spatiotemporal Image Correlation Spectroscopy (STICS) Theory, Verification, and Application to Protein Velocity Mapping in Living CHO Cells Benedict Hebert,

Mesoscale Simulation of Blood Flow in Small Vessels Prosenjit Bagchi Biophysical Journal Volume 92, Issue 6, Pages (March 2007) DOI: /biophysj

Capsaicin Interaction with TRPV1 Channels in a Lipid Bilayer: Molecular Dynamics Simulation Sonya M. Hanson, Simon Newstead, Kenton J. Swartz, Mark S.P.

The Importance of the Hook Region of the Cochlea for Bone-Conduction Hearing Namkeun Kim, Charles R. Steele, Sunil Puria Biophysical Journal Volume 107,

The Interrelations among Stochastic Pacing, Stability, and Memory in the Heart Hila Dvir, Sharon Zlochiver Biophysical Journal Volume 107, Issue 4, Pages.

Cell Traction Forces Direct Fibronectin Matrix Assembly Christopher A. Lemmon, Christopher S. Chen, Lewis H. Romer Biophysical Journal Volume 96, Issue.

Quantifying the Rheological and Hemodynamic Characteristics of Sickle Cell Anemia Huan Lei, George Em Karniadakis Biophysical Journal Volume 102, Issue.

Effects of Macromolecular Crowding on the Structure of a Protein Complex: A Small- Angle Scattering Study of Superoxide Dismutase Ajith Rajapaksha, Christopher.

Agarose-Dextran Gels as Synthetic Analogs of Glomerular Basement Membrane: Water Permeability Jeffrey A. White, William M. Deen Biophysical Journal Volume.

Nonlinear Poisson Equation for Heterogeneous Media Langhua Hu, Guo-Wei Wei Biophysical Journal Volume 103, Issue 4, Pages (August 2012) DOI: /j.bpj

Direct Measurements of the Mechanical Stability of Zinc-Thiolate Bonds in Rubredoxin by Single-Molecule Atomic Force Microscopy Peng Zheng, Hongbin Li.

Membrane Physical Chemistry - II

Maryam Sayadi, Seiichiro Tanizaki, Michael Feig Biophysical Journal

Volume 106, Issue 2, Pages 26a-27a (January 2014)

Plasmonic Electricity: A Digital form of Metal-Enhanced Fluorescence

Thermo- and Mesostabilizing Protein Interactions Identified by Temperature-Dependent Statistical Potentials Benjamin Folch, Yves Dehouck, Marianne Rooman

Practice Notes from the AAAI

Henry van den Bedem, Ellen Kuhl Biophysical Journal

Calendar Annals of Emergency Medicine

AANP Forum The Journal for Nurse Practitioners

AANP Forum The Journal for Nurse Practitioners

Volume 110, Issue 11, Pages (June 2016)

Practice Notes from the AAAAI

Dynamic Motions of the HIV-1 Frameshift Site RNA

SAXS-Oriented Ensemble Refinement of Flexible Biomolecules

News & Notes Journal of Allergy and Clinical Immunology

Support Your Specialty

Volume 69, Issue 3, Pages (February 2006)

Min Wang, Mary Prorok, Francis J. Castellino Biophysical Journal

Dynamic Transmission of Protein Allostery without Structural Change: Spatial Pathways or Global Modes? Tom C.B. McLeish, Martin J. Cann, Thomas L. Rodgers

News & Notes Journal of Allergy and Clinical Immunology

Volume 99, Issue 3, Pages (August 2010)

Huan-Xiang Zhou, Osman Bilsel Biophysical Journal

Nevra Ozer, Celia A. Schiffer, Turkan Haliloglu Biophysical Journal

This Month in AJKD American Journal of Kidney Diseases

Computational Modeling of Structurally Conserved Cancer Mutations in the RET and MET Kinases: The Impact on Protein Structure, Dynamics, and Stability

Practice Notes from the AAAI

Footnotes1 Journal of Allergy and Clinical Immunology

Systems Biophysics: Multiscale Biophysical Modeling of Organ Systems

News & Notes Journal of Allergy and Clinical Immunology

Volume 102, Issue 3, Pages (February 2012)

This Month in AJKD American Journal of Kidney Diseases

Presentation transcript:

A Dynamics Criterion to Determine Allostery Ming S. Liu, Billy D. Todd, Richard S. Sadus Biophysical Journal Volume 96, Issue 3, Pages 426a-427a (February 2009) DOI: 10.1016/j.bpj.2008.12.2185 Copyright © 2009 Biophysical Society Terms and Conditions

Figure 1 Difference matrix of dynamic correlations in protein - the Aquifex AdK case: red, a correlated motion; blue, an anti-correlated motion; and red (blue) regions correspond to same (opposite) direction distortions. The presence of both positive and negative correlations indicates the existence of an allosteric cooperativity during conformational changes, as was proved by NMR experiments. Biophysical Journal 2009 96, 426a-427aDOI: (10.1016/j.bpj.2008.12.2185) Copyright © 2009 Biophysical Society Terms and Conditions