NAMIC Software Development Workshop

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Presentation transcript:

NAMIC Software Development Workshop February 17-18, 2005 BIRN CC, UCSD

Next 15 minutes… NAMIC Background: What, Who, Why Workshop Objectives Agenda for Today

NAMIC Background: What? Supported by NIH One of four NCBCs National Center for Biological Computing PIs: Ron Kikinis, Steve Wong Unique in strong engineering emphasis along with science: value associated with software persistence 7 Cores, 13 Sites

Structure

NAMIC Background: Who? Algorithms Core Harvard MIT Utah Segmentation Registration Foundational Methods UNC Georgia Tech Structural Features and Statistics Connective Features and Statistics

NAMIC Background: Who? Engineering Core UCLA Software Engineering Software Engineering Tools Software Quality Isomics Software Integration Data Access Tools Distributed Computing Applications

NAMIC Background: Who? DBP Core UCI Harvard Segmentation Registration Dartmouth Foundational Methods Toronto Structural Features and Statistics Connective Features and Statistics

NAMIC Background: Why? Or the NAMIC Vision Student reads a paper that references a NAMIC algorithm… goes to web site .. uses software implementation of algorithm to see results on own data…

Where does this workshop fit in?

Workshop Objectives Provide a hands-on introduction to software development using NAMIC Kit V0 ITK 1.8 Slicer 2.4 Introduce team to NAMIC ITK and Slicer Experts Start exchange of feedback between algorithm, engineering, and dbp cores

Desired Outcome over next 2-3 months Use one of the tools in your own work, in collaboration with an engineering core member Provide feedback on the fit of the tool with your research Bring some of this experience with you to the AHM in SLC in Feb

Agenda for Day 1: Slicer 9-9:30am:Welcome and Objectives(Ron Kikinis, Tina Kapur) 9:30-10:15am: NA-MIC Software Engineering Methodology and Resources (Dan Blezek) 10:15-10:30 Break 10:30-11:15am Developers tools (Steve Pieper) 11:15-12noon: Slicer Overview, Slicer Demo, Slicer Build and Deploy System (Steve Pieper) noon-1pm: lunch 1-1:30pm: DTI Processing Demo (Raul San Jose) 1:30-2:30 Slicer Architecture, and Compiling Custom Modules (Steve Pieper) 2:45-3:00 Break 3:00-3:45pm: Integrating ITK/VTK modules in Slicer Slicer and ITK I/O factory generic readers module (Raul San Jose) 3:45 - 4:30 ITK/Slicer Integration Exercises 4:30-5pm: Introduction to the UCSD Data Grid Infrastructure (Mark James) 5-5:15pm: wrap-up (Tina Kapur)

Agenda for Day 2: ITK 9:00am-noon: ITK Architecture (Luis Ibanez) noon-12:30: lunch 12:30-1:30pm: ITK Filtering (Luis Ibanez) 1:45-3pm: ITK Segmentation (Luis Ibanez, Josh Cates) 3-3:20pm: break 3:20-4:50pm: ITK Image Registration (Luis Ibanez) 5pm-6pm: Intro to VTK & Combining ITK and VTK (Luis Ibanez) 6pm: Wrap-up (Tina Kapur)