Two-electron multicentric covalent bonding: how many centres?

Slides:



Advertisements
Similar presentations
Chemical bonds.
Advertisements

Puentes de Hidrógeno. Intermolecular Forces 11.2 Intermolecular forces are forces between molecules. Intramolecular forces hold atoms together in a molecule.
Ionic Bonding. Formation of Bond Electrons are transferred from an atom of low electronegativity to one of high electronegativity Anion (-) and cation.
Intermolecular Forces Chemistry Mrs. Coyle. Intermolecular Forces The forces with which molecules attract each other.
Intermolecular Forces. Intermolecular forces are weak, short-range attractive forces between atoms or molecules. Intermolecular forces ultimately derive.
Intermolecular Forces. Intermolecular forces are weak, short-range attractive forces between atoms or molecules. Intermolecular forces ultimately derive.
2.4 Intermolecular Forces
Chapter 16 Notes, part IV Polarity and IMFs. Types of Bonds Up until now, we have assumed that there are two types of bonds: Covalent and Ionic. This.
Types of Intermolecular Bonds
Interparticle Bonding
Attractions Between Molecules or Intermolecular Forces (IM Forces) Chapter 8.4.
BONDING Bond types bond energies
Bond Types. Bond Types: At the conclusion of our time together, you should be able to: 1. Identify 5 different bond types 2. Explain each bond type 3.
SECTION 2-1 CONT. Bonding. TYPES OF CHEMICAL BONDS  Bonds involve the electrons in an atom.  1. Ionic Bonds Electrons are transferred from one atom.
Introduction to Chemistry – Background for Nanoscience and Nanotechnology Prof. Petr Vanysek.
Chapter 13 Notes #3 Intermolecular Forces
INTERMOLECULAR FORCES (bonds) Occur between molecules Weaker than intramolecular forces.
Polar Bonds and Molecules Chapter 8.4
Intermolecular Interactions
Polar Bonds and Molecules Notes. Bond Polarity The bonding pairs of electrons are pulled in a tug-of-war between the nuclei of the atoms sharing the electrons.
I. Intermolecular and Intramolecular Forces section 2 Ch Liquids & Solids C. Johannesson.
Spring 2016  There are two types of covalent bonds ◦ Nonpolar Covalent Bonds (share equally) ◦ Polar Covalent Bonds (share unequally)
Chemical Bonding. Covalent Bonds Formed when 2 atoms share electrons.
Chemistry 8.4.
Chemical Bonding.
The Chemistry of Life Biology is a multidisciplinary science.
Atomic & Molecular Bonding
What factor is sequential in the Periodic Table of Elements?
X-ray charge density reveals fine details in π-stacks of semiquinone radicals which determine conductivity Krešimir Molčanov, Christian Jelsch, Ana Šantić,
Intermolecular forces
INTERMOLECULAR FORCES OF ATTRACTION
Chem Take out HW to be checked Today: Molecular Shapes Cont; IMFs
Section 2: Intermolecular Attractive Forces
Intermolecular Forces
Ionic and Metallic Bonding
Intermolecular Forces and
Intermolecular Forces
Small Molecules: Structure and Behavior
Intermolecular Forces
Electronegativity and Polarity
Chemistry Review What do you remember?
1.3 Molecular Elements Diatomic Elements
Intermolecular Forces Notes
8.4 Bond Polarity Bonding Ionic Covalent.
AP Chemistry Chemistry Basics.
Intermolecular attractions
Biochemistry: Chemistry Basics
Intermolecular Forces
Biochemistry: Chemistry Basics
Essential Elements of Life
Intermolecular Forces
Chemical Bonding.
Intermolecular Forces
Lecture 20: Intermolecular Forces and Condensed Phases
Intramolecular forces vs. Intermolecular forces
The Chemical Context of Life
AP Chem Take out HW to be checked Today: Molecular Shapes Cont; IMFs
Aim: What attracts molecules to each other?
Intermolecular Forces Notes
Hydrogen bonds What are they?
AP Chemistry Chemistry Basics.
Intermolecular Forces (Ch6)
AP Chemistry Chemistry Basics.
Chapter 2: The Chemical Context of Life
Biochemistry: Chemistry Basics
On the border between inter- and intramolecular: two-electron multicentric covalent bonding Krešimir Molčanov, Biserka Kojić-Prodić, Vladimir Stilinović,
Biochemistry: Chemistry Basics
Iodide∙∙∙π interactions of perhalogenated quinones in co-crystals with organic bases Krešimir Molčanov, Vladimir Stilinović, Gregor Mali, Jože Grdadolnik,
Biochemistry: Chemistry Basics
Intermolecular Forces
Presentation transcript:

Two-electron multicentric covalent bonding: how many centres? Krešimir Molčanov, Biserka Kojić-Prodić, Vladimir Stilinović, Zhongyu Mou, Miklos Kertesz, Bruno Landeros-Rivera, Jesús Hernández-Trujillo

Three most important intermolecular interactions Hydorgen bonding: short, strong HB O···H···O in the Zundel ion Halogen bonding: Br atom shifted towards the acceptor in N- bromosuccinimide∙3,5- dimethylpyridine π-stacking: strong interactions between semiquinone radical anions

Electron pairs: covalent bond G. N. Lewis, 1916. M. L. Huggins, 1919. Latimer & Rodebush, 1920.

Zundel ion (H5O2+) (Georg Zundel, 1968) 2.39 – 2.44 Å 100 K 293 K Slo-Cro meeting, Pokljuka, 2012. Phys. Chem. Chem. Phys., 2014, 16, 998-1007.

Single-well potential Slo-Cro meeting, Pokljuka, 2012. Phys. Chem. Chem. Phys., 2014, 16, 998-1007.

Charge density of the Zundel ion ρCP (eÅ-3) Laplacian (eÅ-3) Bond order, ntopo O5-H1 1.0890 -11.45 0.310 O6-H1 0.9555 -6.46 0.263 O5-H5A 2.0785 -25.42 0.473 H6A-O7i 0.2015 3.90 0.061 CrystEngComm, 2017, 19, 3898-3901.

Halogen transfer in strong halogen bonds: N-bromosuccinimide∙3,5-dimethylpyridine 180° C3 C2 C1 C5 N2 N1 1.932 Å 2.319 Å N∙∙∙Br / Å N-bs 1.836 N-bs∙3,5-dmp „bond” 1.932 N-bs∙3,5-dmp „contact” 2.319 intermolecular N∙∙∙Br > 3.12 sum of van der Waals radii 3.40 } Δ = 0.387 Å

Charge densities: N-bs N-bs·3,5-dmp

Electrostatic potential (electron density isosurface of 0.35 e Å-3) N-bs·3,5-dmp N-bs

Bromonium ion 173.8° 2.080 Å 2.105 Å

Three-centre / two-electron covalent bond! Length (Å) cp (eÅ-3) Laplacian (eÅ-3) N1–Br1 1.8360(3) 1.118 0.82 1.9321(4) 0.923 5.67 N2∙∙∙Br1 2.3186(4) 0.339 3.28 N∙∙∙Br∙∙∙N 2.082 0.724 4.95 2.105 0.708 4.61 N∙∙∙Br 2.806 0.148 -2.2 N-bs } N-bs·3,5-dmp } bromonium Theoretical value by Crugeiras & Rios, PCCP, 2016, 18, 30961-30971.

„Pancake bonding”: multicentric two-electron bonding R. S. Mulliken, 1960s pancake palačinka

„Pancake bonding”: multicentric two-electron bonding Cui, Lischka, Mueller, Plasser, Kertesz, ChemPhysChem, 2014, 15, 165-176. Miller & Novoa, Acc. Chem. Res., 2007, 40, 189-196.

„Pancake bonding” between semiquinone radicals dimers equidistant radicals trimers 2.84 Å 2.86 Å 3.17 Å 3.60 Å 3.59 Å B A Cryst. Growth Des., 2016, 16, 4777-4782. Chem. Eur. J., 2018, 24, DOI: 10.1002/chem.201800672

„Pancake bonded” dimers (diamagnetic): critical points ρmax > 0.095 e Å-3 2.86 Å ρmax < 0.040 e Å-3 3.60 Å (3, -1) bond (3, +1) ring cenroid (3, +3) cage centroid

„Pancake bonded” dimer (diamagnetic): HOMO orbitals Intermolecular bond order all atoms 0.80 only C atoms 0.27 inter-dimer 0.04 Covalent contribution: –9.4 kcal mol-1

„Pancake bonding” in a stack of equidistant rings: critical points ρmax < 0.050 e Å-3 3.17 Å (3, -1) bond (3, +1) ring cenroid (3, +3) cage centroid

„Pancake bonding”between equidistant rings: HOMO orbitals Intermolecular bond order all atoms 0.26 only C atoms 0.09 Covalent contribution: –2.9 kcal mol-1

„Pancake bonded” polymer! ΔE = 0.34 eV

[N-Me-4-(Me)2NPy]2(Cl4Q)3 Charge-transfer complex –0,58 Charges from Pval: +0.96 –0,76 –1.92 –0,58 +0.96 2– 1+ 1+ Chem. Eur. J., 2018, 24, DOI: 10.1002/chem.201800672

„Pancake bonding” between three rings ρmax > 0.077 e Å-3 2.84 Å 3.59 Å ρmax < 0.045 e Å-3 (3, -1) bond (3, +1) ring cenroid Chem. Eur. J., 2018, 24, DOI: 10.1002/chem.201800672 (3, +3) cage centroid

„Pancake bonding” between three rings: HOMO orbitals Intermolecular bond order all atoms < 0.71 probably ~ 0.5 Covalent contribution: –4.11 kcal mol-1

Conclusions Strong hydrogen bonds, strong halogen bonds and strongest π-stacking interactions are in fact weak covalent bonds! Two-electron bonding between a pair of semiquinones (12 or 24 centres) Two-electron bonding between three rings (18 or 36 centres) 1D multicentric-bonded „polymer”

Acknowledgements Université de Lorraine Christian Jelsch Claude Lecomte Emmanuel Wenger RBI, Zagreb Marijana Jurić Lidija Androš Dubraja Nadica Maltar-Strmečki Ana Šantić Dijana Žilić Darko Babić Valentina Milašinović University of Zagreb Vladimir Stilinović Damir Pajić Nikolina Novosel Krešo Zadro KI, Ljubljana Jernej Stare Gregor Mali Universität Göttingen Dietmar Stalke Serhiy Demeshko University of Ljubljana Anton Meden Croatian Science Foundation, grant no. IP-2014-09-4079 Croatian Academy of Sciences and Arts French-Croatian bilateral, Slovenian-Croatian bilateral, German-Croatian bilateral