Department of Biomedical Informatics, The Ohio State university

Slides:



Advertisements
Similar presentations
DrMohammadSadrkabir Editor:. FREQUENCY OF ELEVATED HEPATOCELLULAR CARCINOMA (HCC) BIOMARKERS IN PATIENTS WITH ADVANCED HEPATITIS C The American Journal.
Advertisements

Of aerobic and anaerobic metabolism during sports
Glycolysis ط     Steps and key enzymes for glycolysis (irreversible reactions) ط     Dual role of glycolysis; degrades glucose to generate ATP and source.
Prediction of Therapeutic microRNA based on the Human Metabolic Network Ming Wu, Christina Chan Bioinformatics Advance Access Published January 7, 2014.
FUNCTIONAL GENOMICS REVEAL THAT THE SERINE SYNTHESIS PATHWAY IS ESSENTIAL IN BREAST CANCER Introduction: Tim Butler Spellman Lab.
ICNCT-16, June 2014, Helsinki Glioma heterogeneity and the L-Amino acid transporter-1 (LAT1): A first step to stratified BPA-based BNCT? D. Ngoga 1 ; C.
Glycolysis Eric Niederhoffer SIU-SOM Glucose Pyruvate Lactate 10 steps No O 2 Energy (ATP) and metabolites 3 regulated steps.
WE Presentation #3, Lee et al Cell, “A Lactate-Induced Response to Hypoxia” 2015.
Gluconeogenesis ط Definition and Importance, ط Reactions and irreversibility ط Substrates : Glycerol, Lactate, Glucogenic amino acids, Odd chain fatty.
The role of regulatory B cells on hepatocellular carcinoma progression Conclusion Results Fig2. (A and B) In vivo, Bregs in SCID mice increased the size.
Tia R. Tidwell 1, 2 ;Kjetil S#cod#x000F8;reide 2, 3, 4 ;Hanne R
Genome-wide Responses to Mitochondrial Dysfunction
Cristoforo Grasso, Gerrit Jansen, Elisa Giovannetti 
Volume 15, Pages (February 2017)
R. Tidwell Tia 1, 2 ;S#cod#x000F8;reide Kjetil 2, 3, 4 ;R
Taipei Veterans General Hospital,
Metabolism: Glycolysis
Cellular Respiration Stage 1: Glycolysis
Cellular Respiration Stage 1: Glycolysis
Cellular Respiration Stage 1: Glycolysis
Cellular Respiration Stage 1: Glycolysis
Cellular Respiration Stage 1: Glycolysis
Cancer Metabolism & Cancer Genetics
Cellular Respiration Stage 1: Glycolysis
Saul Carcamo University College of London
Cancer Metabolism: A New Treatment Approach
Cellular Respiration Stage 1: Glycolysis
Carbohydrates Metabolism
Cellular Respiration Stage 1: Glycolysis
Cellular Respiration Stage 1: Glycolysis
Cellular Respiration Stage 1: Glycolysis
High Expression of PHGDH Predicts Poor Prognosis in Non–Small Cell Lung Cancer  Jinhong Zhu, Jianqun Ma, Xudong Wang, Tianjiao Ma, Shu Zhang, Wei Wang,
Cellular Metabolism and Disease: What Do Metabolic Outliers Teach Us?
Cellular Respiration Stage 1: Glycolysis
Nat. Rev. Nephrol. doi: /nrneph
Cellular Respiration Stage 1: Glycolysis
Cellular Respiration Stage 1: Glycolysis
Cellular Respiration Stage 1: Glycolysis
Volume 148, Issue 3, (February 2012)
Volume 148, Issue 4, Pages (April 2015)
Volume 17, Issue 3, Pages (March 2013)
Understanding the Intersections between Metabolism and Cancer Biology
Metabolic reprogramming in the hypoxic microenvironmentThis figure shows the metabolic processes that are upregulated in response to hypoxia and the therapeutic.
Volume 4, Issue 3, Pages (August 2013)
Volume 10, Issue 8, Pages (March 2015)
Volume 60, Issue 2, Pages (October 2015)
Cellular Respiration Stage 1: Glycolysis
Nat. Rev. Nephrol. doi: /nrneph
Tumor Cell Metabolism: Cancer's Achilles' Heel
Fig. 1. miR-370 was downregulated, and GUCD1 was upregulated in HCC
Glycolysis.
Cellular Respiration Stage 1: Glycolysis
Acetyl-CoA Succinyl-CoA
Molecular prognostication of liver cancer: End of the beginning
Gabriela Andrejeva, Jeffrey C. Rathmell  Cell Metabolism 
Single-Gene Disorders: What Role Could Moonlighting Enzymes Play?
Cellular Respiration Stage 1: Glycolysis
Cellular Respiration Stage 1: Glycolysis
Cellular Respiration Stage 1: Glycolysis
Cellular Respiration Stage 1: Glycolysis
Volume 13, Issue 9, Pages (December 2015)
Lecture 12 Slides rh.
Genetics of hepatocellular carcinoma: The next generation
Glycolysis is downregulated in idiopathic pulmonary fibrosis (IPF) lungs, with possible shuttling of intermediates to the sorbitol and pentose phosphate.
Cellular Respiration Stage 1: Glycolysis
LINC00092 binds with PFKFB2 to promote ovarian cancer metastasis.
Tricarboxylic acid (TCA) cycle.
The pathways of central metabolism.
Main metabolic pathways deregulated in cancers and corresponding targeting drugs. Main metabolic pathways deregulated in cancers and corresponding targeting.
Fig. 1. FAM83H over-expression is associated with poor prognosis of CC
Presentation transcript:

Department of Biomedical Informatics, The Ohio State university Dysregulated expression of glucose metabolic enzymes is associated with poor prognosis of patients with hepatocellular carcinoma Xiaoli Zhang, PhD. Department of Biomedical Informatics, The Ohio State university Email: zhang.611@osu.edu

Introduction Liver cancer is the second leading cause of cancer related death worldwide because of limited therapeutic options, where hepatocellular carcinoma (HCC) accounts for over 80% of liver cancer cases. It is highly malignant, recurrent, drug resistant, and often diagnosed at the advanced stage. The enzymes within the glucose metabolic pathways have been shown to be essential for the growth and survival of cancer cells. The accelerated aerobic glycolysis in tumor has been considered one of the hallmarks that distinguish cancer cells from normal cells. Liver cancer cells reprogram their metabolic pathways to meet their needs for rapid proliferation and generation of the biomass for tumor growth.

Objective Using liver hepatocellular cancer dataset of the Cancer Genome Atlas (LIHC TCGA) to investigate how the expression of genes in glucose metabolic pathways are altered how the alterations are associated with patient clinical stage, overall survival, and recurrence free survival in liver cancer with the ultimate goal to identify biomarkers for the development of personized medicine to treat liver cancer.

Dysregulated expression of glucose metabolic enzymes is associated with poor prognosis of HCC patients

Red: upregulated exp in tumor. Green: downregulated exp in tumor. F2,6 BP G6P F6P F1,6BP PEP DHAP 1,3BPG G3P 3PG 2PG pyruvate lactate succinate Fumarate Malate OAA AcCoA Citrate Cis-Aconitate D-isocitrate α-KG Succiny-CoA glucose LDHA LDHD SLC2A2, SLC2A3, SLC2A5 GCK, HK3 ALDOA, ALDOB, ALDOC PGK1 PGAM2 ENO1,ENO3 PKM2 PFKFB1, PFKFB2, PFKFB3, PFKFB4 FAS ACLY ACO1 CS IDH2 SUCLG2 SDHA,SDHB,SDHD PCK1,PCK2 SLC16A1, SLC16A3, SLC16A4, SLC16A7 G1P PGM1 PC 2,3BPG BPGM Red: upregulated exp in tumor. Green: downregulated exp in tumor. Bold: independent predictors for OS

More information please stop by poster session #215949 at 10:30AM. Thank you!!