The SPL Abdominal Atlas

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Presentation transcript:

The SPL Abdominal Atlas Slicer3 Tutorial The SPL Abdominal Atlas Florin Talos, MD Marianna Jakab, MS http://slicer.org © 2011, All Rights Reserved Surgical Planning Laboratory Harvard Medical School

Acknowledgements NIH P41RR013218 (NAC) NIH U54EB005149 (NA-MIC) Surgical Planning Laboratory Harvard Medical School http://slicer.org © 2011, All Rights Reserved

Disclaimer Disclaimer Disclaimer It is the responsibility of the user of 3DSlicer to comply with both the terms of the license and with the applicable laws, regulations and rules. Surgical Planning Laboratory Harvard Medical School http://slicer.org © 2011, All Rights Reserved

Materials Slicer 3 Atlas data set CT Labels 3D-models http://slicer.org/pages/Special:SlicerDownloads Atlas data set CT Labels 3D-models Surgical Planning Laboratory Harvard Medical School http://slicer.org © 2011, All Rights Reserved

Learning Objectives Loading the atlas data Creating and displaying customized 3D-views of anatomy Surgical Planning Laboratory Harvard Medical School http://slicer.org © 2011, All Rights Reserved

Prerequisites Slicer Training Loading and Viewing Data http://www.slicer.org/slicerWiki/index.php/Slicer_3.6:Training Surgical Planning Laboratory Harvard Medical School http://slicer.org © 2011, All Rights Reserved

Overview Part 1: Loading the Abdominal Atlas Data Part 2: Creating and Displaying Customized 3D Anatomical Views Surgical Planning Laboratory Harvard Medical School http://slicer.org © 2011, All Rights Reserved

Loading the Abdominal Atlas Data Slicer can load: Anatomic grayscale data (CT, MRI)... Label maps……………………………. 3D-Models…………………………….. MRML Scenes ……………………….. Surgical Planning Laboratory Harvard Medical School http://slicer.org © 2011, All Rights Reserved

Loading the Atlas Data Loading the Abdominal Atlas Data Select File Load Scene... In the Select File window, select the Abdominal_Atlas_2011v1.0.mrml file and click Open Surgical Planning Laboratory Harvard Medical School http://slicer.org © 2011, All Rights Reserved

Loading the Abdominal Atlas Data 3D-models CT with overlaid label maps Surgical Planning Laboratory Harvard Medical School http://slicer.org © 2011, All Rights Reserved

Overview Part 1: Loading the Brain Atlas Data Part 2: Creating and displaying customized 3D anatomical views Surgical Planning Laboratory Harvard Medical School http://slicer.org © 2011, All Rights Reserved

Creating Customized 3D Views By taking advantage of the ability to selectively display 3D-models, customized 3D views of anatomy can be created. Surgical Planning Laboratory Harvard Medical School http://slicer.org © 2011, All Rights Reserved

Customized 3D Views Capture and name a scene snapshot Restore or delete saved scene snapshots Surgical Planning Laboratory Harvard Medical School http://slicer.org © 2011, All Rights Reserved

Creating Customized 3D Views Select the Models module Expand the Hierarchy & Display tab From the pull-down menu, select the model of interest, then check the Visibility box, in order to make them visible in the 3D viewer; to make the models invisible uncheck the box. Surgical Planning Laboratory Harvard Medical School http://slicer.org © 2011, All Rights Reserved

Creating Customized 3D Views Click on the Capture a screenshot of the 3D view in the Manipulate 3D View Panel Select a directory and a name for your customized 3D-view (e.g. Portal Circulation) Surgical Planning Laboratory Harvard Medical School http://slicer.org © 2011, All Rights Reserved