Mass spectrometry analysis.

Slides:



Advertisements
Similar presentations
Biochemistry Part 3 Lehningers Biochemistry. Amino Acid.
Advertisements

Fig Nuclear Receptors. Fig Shiu et al. (1998) Cell 95: Estrogen Receptor LBD with agonist  -helix from interact- ing co- activator.
Model of the interaction of T3 with the T3 receptor
Figure 1. Structure of the minor groove binders used in this study
Accumulation of transcripts from MULE‐F19G14–CyP40 and transposons in mom1 and ddm1. Accumulation of transcripts from MULE‐F19G14–CyP40 and transposons.
Structures of CK1 inhibitors and their effects on CK1 activity in vitro. Structures of CK1 inhibitors and their effects on CK1 activity in vitro. (A) Structures.
Statistical analysis of transgene expression in pigs generated by lentiviral gene transfer. Statistical analysis of transgene expression in pigs generated.
Model for the involvement of Rep helicases as genome packaging motors.
Positioning of the TGF‐β3 and BMP receptor complexes on a membrane surface. Positioning of the TGF‐β3 and BMP receptor complexes on a membrane surface.
A minimal PALB2‐binding motif in the BRCA2 amino terminus.
The supernatants of necrotic cells that cause dendritic cell maturation contain HMGB1. The supernatants of necrotic cells that cause dendritic cell maturation.
4E‐BP1 inhibits calicivirus translation but does not affect VPg–eIF4E interaction. 4E‐BP1 inhibits calicivirus translation but does not affect VPg–eIF4E.
Surface distribution of immunogold‐labelled PS I (A–C) and ATP synthase (D–F) complexes. Surface distribution of immunogold‐labelled PS I (A–C) and ATP.
NS3 has no interferon and PKR antagonistic properties.
PKA phosphorylates catalytic α‐ and regulatory β‐subunits of AMPK at multiple sites. PKA phosphorylates catalytic α‐ and regulatory β‐subunits of AMPK.
Mechanisms of lncRNA function.
(A, B) Stereoscopic views of the P3 RNase MRP RNA domain in complex with the RNase MRP/RNase P protein components Pop6 and Pop7. (A, B) Stereoscopic views.
The RNA components of eukaryotic RNase P and RNase MRP have multiple common structural features including the P3 domain. The RNA components of eukaryotic.
The effect of tributyltin on coactivator recruitment and activation of RXR‐α and PPAR‐γ. The effect of tributyltin on coactivator recruitment and activation.
Yeast containing pICC10 (Tir) and pICC267 (CK18) and pTY474S and pICC267 demonstrated an approximately 12.5‐fold increase in β‐galactosidase activity compared.
FtsK‐independent dif recombination in the presence of HinXerC.
Cooperative formation of a higher‐order complex containing AP1 and HMG‐I(Y). Cooperative formation of a higher‐order complex containing AP1 and HMG‐I(Y).
Effect of β‐DG on activity of MEK and ERK
The necdin promoter is a direct target of NSCL‐2.
Calicivirus translation and VPg–eIF4E interaction is insensitive to cap analogue. Calicivirus translation and VPg–eIF4E interaction is insensitive to cap.
Double‐stranded RNA binding of NS3 is required for HIV‐1 Tat complementation. Double‐stranded RNA binding of NS3 is required for HIV‐1 Tat complementation.
AO domain of LSD1 is responsible for its interaction with Snail1.
HDAC1 is an integral component of the Microprocessor complex and modifies its affinity to primary miRNA transcripts. HDAC1 is an integral component of.
Functional properties of pRb.
Data analysis of thermal proteome profiling
In vitro modification by SUMO‐1 and SUMO‐2 of HDACs and HDAC‐related proteins. 35S‐labelled in vitro translated HDAC1, HDAC3, HDAC6 and MITR were incubated.
Recognition of double‐stranded telomeric DNA
SPR and NMR analyses of interactions of HOIL‐1L–UBL with the HOIP–UBA derivative. SPR and NMR analyses of interactions of HOIL‐1L–UBL with the HOIP–UBA.
Identification of SERCA2 as a binding protein of toll‐like receptor 9 (TLR9) Representative image of tandem affinity purification visualized by silver.
Stoichiometry of TGF‐β receptor complexes determined by HPLC analysis.
MCM3AP‐mediated acetylation of MCM3.
MyoD is acetylated on lysines 99 and 102 in myoblasts.
Validation of the CCE associations by mass spectrometry.
Effect of GyrI on CcdB (A) and microcin B17 (B) stabilized gyrase–DNA covalent complex. Effect of GyrI on CcdB (A) and microcin B17 (B) stabilized gyrase–DNA.
Direct transcriptional regulation oflncRNAs by HIF AHeat map showing fold regulation by hypoxia and by the indicated HIF siRNA for lncRNAs adjacent to.
Mutations affecting HOIP–UBA and HOIL‐1L–UBL interaction that compromise NF‐κB activation. Mutations affecting HOIP–UBA and HOIL‐1L–UBL interaction that.
Volume 22, Issue 7, Pages (July 2014)
Identification of MOSPD2, a new FFAT motif‐binding protein
Npl3 functions as an independent export adaptor for the pre‐60S ribosomal subunit. Npl3 functions as an independent export adaptor for the pre‐60S ribosomal.
The Haystack Is Full of Needles: Technology Rescues Sugars!
Expression and occupancy of a set of transcription factors corresponding to the identified motifs at FAIRE peaks Expression and occupancy of a set of transcription.
Quantification of readthrough peptides in the presence of paromomycin
The MSP domain of MOSPD2 binds the FFAT motif
Identification of miR‐499 targets
BAM3 is a CLE45 receptor BAM3 is a CLE45 receptor Schematic overview of the BAM3 gene structure. bam3 loss‐of‐function mutations that were isolated as.
The MSP domain of MOSPD2 binds the FFAT motif with an affinity in the micromolar range The MSP domain of MOSPD2 binds the FFAT motif with an affinity in.
Tsc1 co‐chaperone inhibits Hsp90 chaperone function
Activated Gα13 inhibits AhR‐mediated transcriptional activity.
Sequence alignment of PHCCEx domains with secondary structure elements of the Tiam2 PHCCEx domain at the top. Sequence alignment of PHCCEx domains with.
The Flip Side Chemistry & Biology
Specificity of methylation mediated by the COPR5–PRMT5‐containing complex. Specificity of methylation mediated by the COPR5–PRMT5‐containing complex. (A)
An integrated NHR network.
CD44 binding surface of the Tiam2 PHCCEx domain.
Loss of tight junctions on Rac1 activation in mature cysts.
HDAC1 enhances in vitro miRNA processing.
Measuring protein allele‐specific expression (pASE) by liquid chromatography‐coupled mass spectrometry (LC‐MS). Measuring protein allele‐specific expression.
Ubqln1 interacts with Ubqln4.
Volume 17, Issue 4, Pages (February 2005)
In vitro interaction studies (related to Fig 2)‏
Proteomic analysis of human transcription factors Disease correlation of 19 TFs and 4 well‐studied FOX family members, based on their GO annotations. Proteomic.
Characterization of GDF11 signalling through type I and type II receptors. Characterization of GDF11 signalling through type I and type II receptors. Gene.
Volume 85, Issue 1, Pages (July 2003)
Ankyrin domain residues permit activation of LRRK2 by Rab29
Thermodynamic analysis of the interaction between diazaborines and M
TET2 interacts with KLF1 transcription factor.
Presentation transcript:

Mass spectrometry analysis. Mass spectrometry analysis. Non‐denaturing ESI‐MS was used to characterize RXR‐α–TBT complexes in (A) the absence or in (B,C) the presence of a fourfold molar excess of TIF2 peptide. Increasing ion acceleration voltage (Vc) from 50 V (A,B) to 190 V (C) had no effect on the interaction of TBT with RXR. LC‐MS analysis of RXR‐α–TBT complexes either (D) purified or (E) solubilized from crystals was carried out to assess the reversibility of TBT binding. Measured mass corresponds to unbound RXR‐α LBD. ESI‐MS, electrospray ionization mass spectrometry; LBD, ligand‐binding domain; LC‐MS, liquid chromatography‐mass spectrometry; RXR‐α, retinoid X receptor‐α; TBT, tributyltin; TIF2, transcriptional intermediary factor 2. Albane le Maire et al. EMBO Rep. 2009;10:367-373 © as stated in the article, figure or figure legend