THALASSEMIA MINOR DIAGNOSTICS BY A COMPUTATIONAL METHOD

Slides:



Advertisements
Similar presentations
Validity and Reliability of Analytical Tests. Analytical Tests include both: Screening Tests Diagnostic Tests.
Advertisements

Chapter 4 Pattern Recognition Concepts: Introduction & ROC Analysis.
Azita Kheiltash Social Medicine Specialist Tehran University of Medical Sciences Diagnostic Tests Evaluation.
GerstmanChapter 41 Epidemiology Kept Simple Chapter 4 Screening for Disease.
SUPPORT VECTOR MACHINES PRESENTED BY MUTHAPPA. Introduction Support Vector Machines(SVMs) are supervised learning models with associated learning algorithms.
Classification of Microarray Data. Sample Preparation Hybridization Array design Probe design Question Experimental Design Buy Chip/Array Statistical.
Training a Neural Network to Recognize Phage Major Capsid Proteins Author: Michael Arnoult, San Diego State University Mentors: Victor Seguritan, Anca.
Lucila Ohno-Machado An introduction to calibration and discrimination methods HST951 Medical Decision Support Harvard Medical School Massachusetts Institute.
Screening for Disease Guan Peng Department of Epidemiology School of Public Health, CMU.
Prognostic Modelling and Profiling of Breast Cancer Patients after Surgery Ian Jarman School of Computer and Mathematical Sciences Liverpool John Moores.
BASIC STATISTICS: AN OXYMORON? (With a little EPI thrown in…) URVASHI VAID MD, MS AUG 2012.
SPH 247 Statistical Analysis of Laboratory Data May 19, 2015SPH 247 Statistical Analysis of Laboratory Data1.
ENDA MOLLOY, ELECTRONIC ENG. FINAL PRESENTATION, 31/03/09. Automated Image Analysis Techniques for Screening of Mammography Images.
Basic statistics 11/09/13.
Division of Population Health Sciences Royal College of Surgeons in Ireland Coláiste Ríoga na Máinleá in Éirinn Indices of Performances of CPRs Nicola.
Sensitivity Sensitivity answers the following question: If a person has a disease, how often will the test be positive (true positive rate)? i.e.: if the.
Sensitivity & Specificity Sam Thomson 8/12/10. Sensitivity Proportion of people with the condition who have a positive test result Proportion of people.
1 Epidemiological Measures I Screening for Disease.
MEASURES OF TEST ACCURACY AND ASSOCIATIONS DR ODIFE, U.B SR, EDM DIVISION.
CT image testing. What is a CT image? CT= computed tomography CT= computed tomography Examines a person in “slices” Examines a person in “slices” Creates.
Likelihood 2005/5/22. Likelihood  probability I am likelihood I am probability.
Evidence-Based Medicine Diagnosis Component 2 / Unit 5 1 Health IT Workforce Curriculum Version 1.0 /Fall 2010.
A.N.N.C.R.I.P.S The Artificial Neural Networks for Cancer Research in Prediction & Survival A CSI – VESIT PRESENTATION Presented By Karan Kamdar Amit.
Extreme RDW Differential
Diagnostic Tests Afshin Ostovar Bushehr University of Medical Sciences Bushehr, /7/20151.
1 Wrap up SCREENING TESTS. 2 Screening test The basic tool of a screening program easy to use, rapid and inexpensive. 1.2.
THALASSAEMIA Konstantinidou Eleni Siligardou Mikela-Rafaella.
Timothy Wiemken, PhD MPH Assistant Professor Division of Infectious Diseases Diagnostic Tests.
SCREENING FOR DISEASE. Learning Objectives Definition of screening; Principles of Screening.
指導老師 : 李麗華 教授 報告者 : 廖偉丞. Catalog  Author  Abstract  Keywords  Introduction  Artificial neural network ensembles  Lung cancer diagnosis system 
Why Intelligent Data Analysis? Joost N. Kok Leiden Institute of Advanced Computer Science Universiteit Leiden.
Critical Appraisal Course for Emergency Medicine Trainees Module 5 Evaluation of a Diagnostic Test.
TUTORIAL: SCREENING. PERFORMANCE OBJECTIVES Compute and interpret Sensitivity Specificity Predictive value positive Predictive value negative False positive.
Accuracy, sensitivity and specificity analysis
Screening for Disease: Part One
Performance of a diagnostic test Tunisia, 31 Oct 2014
DR.FATIMA ALKHALEDY M.B.Ch.B;F.I.C.M.S/C.M
Lung cancer cell identification based on artificial neural network ensembles 指導老師: 李麗華 教授 報告者: 廖偉丞.
Diagnostic test accuracy. Study design and the 2x2 table
Introduction To Medical Technology
Principles of Epidemiology E
Class session 7 Screening, validity, reliability
A Methodology for Finding Bad Data
Toxicology & Uncertainty in medical testing
Lecture 3.
Development and Validation of HealthImpactTM: An Incident Diabetes Prediction Model Based on Administrative Data Rozalina G. McCoy, M.D.1, Vijay S. Nori,
Comunicación y Gerencia
The proposed hybrid Fuzzy-GA system
Measuring Success in Prediction
CS 698 | Current Topics in Data Science
بسم الله الرحمن الرحيم Clinical Epidemiology
کاربرد آمار در آزمایشگاه
Features & Decision regions
Accuracy, sensitivity and specificity analysis
Hint: Numerator Denominator. Vascular Technology Lecture 34: Test Validation (Statistical Profile and Correlation) HHHoldorf.
CSSE463: Image Recognition Day 11
Is a Positive Developmental-Behavioral Screening Score Sufficient to Justify Referral? A Review of Evidence and Theory  R. Christopher Sheldrick, PhD,
دكتر محسن ميرزائي MD , MPH
The receiver operating characteristic (ROC) curve
Screening, Sensitivity, Specificity, and ROC curves
Accuracy of Magnetic Resonance Imaging in Diagnosis of Liver Iron Overload: A Systematic Review and Meta-analysis  Maria Sarigianni, Aris Liakos, Efthymia.
Figure 1. Table for calculating the accuracy of a diagnostic test.
Patricia Butterfield & Naomi Chaytor October 18th, 2017
Zip Codes and Neural Networks: Machine Learning for
Evaluating Models Part 1
Positive predictive value of screening tests
Somi Jacob and Christian Bach
Roc curves By Vittoria Cozza, matr
Evidence Based Diagnosis
Defining diagnostic brain MRI markers in early MSA
Presentation transcript:

THALASSEMIA MINOR DIAGNOSTICS BY A COMPUTATIONAL METHOD Yulia Einav Holon Institute of Technology Israel

Outline Introduction System design Results Summary & Conclusions Acknowledgements

Introduction Thalassemia Major (homozygous genotype) is particularly prevalent in the Mediterranean region, Middle East, Southeast Asia and some regions of Africa α and β thalassemia are the most common types Thalassemia Minor (TM) is often unrecognized and undiagnosed

Introduction Artificial Neural Networks (ANNs) - mathematical model, which is widely used in diagnosis, medical image analysis and medical data mining ANN resembles the biological cluster of neurons and they learn through experience ANN output could supply a prediction about the patterns and behavior of the studied system

Study objective: To identify thalassemia minor patients from a general population using ANN modeling

Outline Introduction System design Results Summary & Conclusions Acknowledgements

Patients composition inside the database Group Name Number of Patients Healthy 229 Myelodysplastic Syndrome (MDS) 58 Iron Deficient Anemia (IDA) 54 α and β Thalassemia Minor (TM) 185  

System design regarding stages and CBC parameters Groups CBC parameters 1 TM vs. Healthy group MCV, RDW, RBC 2 TM vs. Healthy and MDS group 3 TM vs. Healthy, MDS and IDA 4 MCV, RDW, RBC, HB, MCH, PLT 5 TM vs. Healthy and MDS group 6  

Formulas - Accuracy - False Negative - True Positive Accuracy in statistics measures the closeness of the output of the model to the true data

Formulas TN - True Negative FP - False Positive TP - True Positive FN - False Negative Sensitivity - the ability to correctly detect the TM condition Specificity - the ability to correctly detect the healthy cases

Outline Introduction System design Results Summary & Conclusions Acknowledgements

Thalassemia Minor vs. healthy group Accuracy Value Thalassemia Minor vs. healthy group A 3 CBC parameters 6 CBC parameters

Thalassemia Minor vs. healthy + MDS Accuracy Value Thalassemia Minor vs. healthy + MDS B 3 CBC parameters 6 CBC parameters

Thalassemia Minor vs. healthy + MDS + IDA Accuracy Value Thalassemia Minor vs. healthy + MDS + IDA C 3 CBC parameters 6 CBC parameters

Best ANN at each stage of the study Compared groups Specificity Sensitivity 1. TM vs. Control group 0.958 1 2. TM vs. Control and MDS group 0.967 3. TM vs. Control, MDS and IDA 0.968 0.902 4. TM vs. Control group 5. TM vs. Control and MDS group 6. TM vs. Control, MDS and IDA 0.897 3 CBC parameters 6 CBC parameters

Outline Introduction System design Results Summary & Conclusions Acknowledgements

Summary The study enrolled 526 patients database, which included 185 verified α and β TM cases and control groups Above 1500 ANNs models were created and the highest accuracy networks were selected for the analysis

Conclusions: Separation of TM patients from the control group with specificity of 0.967 and sensitivity of 1 (all TM patients are correctly diagnosed) Separation of TM patients from the control group combined with IDA patients with specificity of 0.968 and sensitivity of 0.9 Calculations based on MCV, RBC and RDW performed better than on 6 parameters (MCV, RDW, RBC, HB, MCH, PLT)

Future Perspectives: A novel broad approach of creating numerous ANNs and selecting the best performing model ANN-based TM diagnostics could be used for broad automatic screening of general population Possible application for the screening of other diseases that change any CBC parameters

Outline Introduction System design Results Summary & Conclusions Acknowledgements

Acknowledgements Holon Institute of Technology, Israel Guy Barnhart-Magen Victor Gotlib Clalit Community Clinic, Israel Rafael Marilus