Mean-field hybrid system

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Mean-field hybrid system Isha Dhiman*, Arvind K. Gupta Indian Institute of Technology Ropar, Punjab, India. *Email-id: ishad@iitrpr.ac.in Steady-state properties of a two-channel inhomogeneous exclusion process Introduction Results Numerical scheme Fig 5: Phase Diagrams- Left: q=0.5 and Right: q=0.1. Red dots: bottleneck-affected region. I: (Sb-S,Sb/S), II: (Sb- LD,Sb/S), III: (HD-LD,Sb/S), IV: (HD-S,Sb/S), V:(HD-S,S). This study is motivated mainly by these two real world examples of transport systems- slowing down of protein synthesis due to lower concentrations of t-RNA emergence of bottlenecks on highways Fig 3: Height of local spike with respect to q and Ω. Triangles denote results from Monte Carlo simulations Fig 1: Top - Translation by slow codon in protein synthesis (ref. [1]) Bottom – cars moving through a bottleneck on a highway Aims To develop a general theoretical approach to study inhomogeneous multi-channel transport systems To derive steady-state phase diagrams and analyze the observed non-equilibrium phenomena To examine the effect of various parameters on steady-state dynamics Fig 4: Left: Formation of a bottleneck-induced shock from upward spike. Right: critical bottleneck rate vs. lane-changing rate Dynamical rules Firstly a lane and then a site i are selected at random. Two-channel model If i = 1, particle entrance occurs with a rate α, if site is vacant; otherwise particle moves forward, if site is occupied. If i = L, particle exit out of the selected lane with a rate β, if site is occupied If 1< i < L (bulk), then particle, if present, tries to detach with a rate ωd. If not, then particle tries to hop forward with a rate pi,j ;otherwise lane-changing occurs with a rate ω. If site is vacant, particle attachment occurs with a rate ωa. Fig 2: Two-channel totally asymmetric simple exclusion process with Langmuir kinetics with a bottleneck in lane A Fig 6: Top left: position of bottleneck-induced shock vs. lane- changing rate. Top right: Turning effect by bottleneck- induced shock. Bottom: Finite-size effect Particles obey hard-core exclusion principle Bottleneck is fixed in bulk in lane A to avoid interactions with boundaries. Symmetric lane-changing rule Conclusions A new hybrid approach based on mean-field approximation theory is introduced, with which we have derived steady-state phase diagrams for the model. The bottleneck affected region expands with an increase in the strength of bottleneck. An increase in lane-changing rate helps in reducing the congestion in the lane with bottleneck and hence, affects positively the stationary dynamics. The bottleneck-induced shock is present not only in inhomogenous lane A, but also in homogeneous lane B. Turning effect, in which bottleneck-induced shock firstly moves rightwards and then changes its direction has been found to be a finite-size effect, which disappears with an increase in system size. Mean-field hybrid system Lane B Continuum part for Discrete part at mth and (m+1)th site in lane A Lane A Continuum part for References Parameters q (transition rate through bottleneck), L (length of each lattice) ε=1/L (lattice constant) t’=t/L (rescaled time) Ω = ω L (rescaled lane-changing rate) Ωd = ωd L (rescaled detachment rate) Ωa = ωa L (rescaled attachment rate) K = ωa/ ωd (binding constant) T. Chou, G. Lakatos, Phys. Rev. Lett. 93 (19) 198101, 2004. R. Wang, M. Liu, R. Jiang, Physica A 387 (2) 457, 2008. I. Dhiman and A. K. Gupta, J. Comput. Phys 309, 227, 2016. Acknowledgements Boundary Conditions: CSIR, New Delhi, India for Senior Research Fellowship Organizers of STATPHYS 26 for financial support Indian Institute of Technology Ropar for financial support