Within Strain ANOVA for All Strains

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Presentation transcript:

Within Strain ANOVA for All Strains WT dCIN5 dGLN3 dHAP4 dSWI4 p < 0.05 2377 (38%) 1995 (32%) 1856 (30%) 2387 (39%) 2583 (42%) p < 0.01 1531 (25%) 1157 (19%) 1007 (16%) 1489 (24%) 1679 (27%) p < 0.001 850 (14%) 566 (9.1%) 398 (6.4%) 679 (11%) 869 (14%) p < 0.0001 449 (7.3%) 280 (4.5%) 121 (2.0%) 240 (3.9%) 446 (7.2%) B & H p < 0.05 1673 (27%) 1117 (18%) 889 (14%) 1615 (26%) 1855 (30%) Bonferroni p < 0.05 226 (3.7%) 109 (1.8%) 20 (0.3%) 61 (1.0%) 179 (2.9%)

Modified T-Test for Wild-type Cold Shock Recovery t test t15 t30 t60 t90 t120 Average Log Fold Change > 0.25 and p < 0.05 582 (9.4%) 865 (14%) 933 (15%) 439 (7.1%) 230 (3.7%) Average Log Fold Change < -0.25 and 486 (7.9%) 717(12%) 867 (14%) 309 (5.0%) 274 (4.4%) Total 1075 (17%) 1587 (26%) 1814 (29%) 749 (12%) 509 (8.2%) Total B & H 0 (0%) 85 (1.4%) 1 (0.016%) Total Bonferroni

Modified T-Test for All Strains Cold Shock Recovery P<0.05 t15 t30 t60 t90 t120 wt 1075 (17%) 1587 (26%) 1814 (29%) 749 (12%) 509 (8.2%) dCIN5 1393 (23%) 756 (12%) 1250 (20%) 634 (10%) 351 (5.7%) dGLN3 1027 (17%) 1622 (26%) 628 (10%) 558 (9.0%) 403 (6.5%) dHAP4 1197 (19%) 1772 (29%) 2006 (32%) 234 (3.8%) 515 (8.3%) dSWI4 n/a 1497 (24%) 1757 (28%) 705 (11%)

STEM Profiles based on Wild-type Data

Between Strain ANOVA with All Strains vs. Wild-type Comparison P<0.05 B-H p<0.05 Wt vs. dCIN5 563 (9.1%) 4 (0.065%) Wt vs. dGLN3 720 (12%) 36 (0.58%) Wt vs. dHAP4 640 (10%) 23 (0.37%) Wt vs. dHMO1 556 (9.0%) 5 (0.081%) Wt vs. dZAP1 553 (8.9%) 31 (0.50%) Wt vs. Spar 1498 (24%) 703 (11%)