P. Gramatica1, F. Consolaro1, M. Vighi2, A. Finizio2 and M. Faust3

Slides:



Advertisements
Similar presentations
Ecology & the Environment
Advertisements

C A INTRODUCTION An Environmental Quality Objective (EQO), intended as a real “No Effect Concentration” (NEC), is not accessible experimentally. The usual.
 Population multiple regression model  Data for multiple regression  Multiple linear regression model  Confidence intervals and significance tests.
MODELLING OF PHYSICO-CHEMICAL PROPERTIES FOR ORGANIC POLLUTANTS F. Consolaro, P. Gramatica and S. Pozzi QSAR Research Unit, Dept. of Structural and Functional.
ABSTRACT The BEAM EU research project focuses on the risk assessment of mixture toxicity. A data set of 124 heterogeneous chemicals of high concern as.
Biostatistics Frank H. Osborne, Ph. D. Professor.
Simple Linear Regression Analysis
SÄTEILYTURVAKESKUS STRÅLSÄKERHETSCENTRALEN RADIATION AND NUCLEAR SAFETY AUTHORITY Protection of the environment from ionising radiation - views of a regulator.
Non ionic organic pesticide environmental behaviour: ranking and classification F. Consolaro and P. Gramatica QSAR Research Unit, Dept. of Structural and.
Sung Kyu (Andrew) Maeng. Contents  QSAR Introduction  QSBR Introduction  Results and discussion  Current QSAR project in UNESCO-IHE.
I can name the steps of the scientific method, in order. Structure & Transformation.
Statistical Methods Statistical Methods Descriptive Inferential
CONCLUSIONS CONCLUSIONS - Missing values of the principal physico-chemical properties are predicted by validated regression models by using different kinds.
Use of Machine Learning in Chemoinformatics Irene Kouskoumvekaki Associate Professor December 12th, 2012 Biological Sequence Analysis course.
The aquatic toxicity values of 57 esters, with experimental and predicted LC50 in fish, EC50 in Daphnia and seaweed and IGC in Entosiphon sulcatum, were.
Chapter 4 Linear Regression 1. Introduction Managerial decisions are often based on the relationship between two or more variables. For example, after.
DESIRABILITY OF POPs ACCORDING TO THEIR ATMOSPHERIC MOBILITY The main goal pursued in this work is the formulation of a POP ranking by atmospheric mobility.
TOXICITY MODELLING OF “EEC PRIORITY LIST 1” COMPOUNDS TOXICITY MODELLING OF “EEC PRIORITY LIST 1” COMPOUNDS Council Directive 76/464/EEC of the European.
Martin Waldseemüller's World Map of 1507 Zanjan. Roberto Todeschini Viviana Consonni Davide Ballabio Andrea Mauri Alberto Manganaro chemometrics molecular.
Paola Gramatica, Elena Bonfanti, Manuela Pavan and Federica Consolaro QSAR Research Unit, Department of Structural and Functional Biology, University of.
QSAR Study of HIV Protease Inhibitors Using Neural Network and Genetic Algorithm Akmal Aulia, 1 Sunil Kumar, 2 Rajni Garg, * 3 A. Srinivas Reddy, 4 1 Computational.
Chapter 9 Environmental Science
ABSTRACT The behavior and fate of chemicals in the environment is strongly influenced by the inherent properties of the compounds themselves, particularly.
P. Gramatica and F. Consolaro QSAR Research Unit, Dept. of Structural and Functional Biology, University of Insubria, Varese, Italy.
QSAR AND CHEMOMETRIC APPROACHES TO THE SCREENING OF POPs FOR ENVIRONMENTAL PERSISTENCE AND LONG RANGE TRANSPORT FOR ENVIRONMENTAL PERSISTENCE AND LONG.
Organic pollutants environmental fate: modeling and prediction of global persistence by molecular descriptors P.Gramatica, F.Consolaro and M.Pavan QSAR.
CHAPTER 2 Research Methods in Industrial/Organizational Psychology
McKim Conference on Predictive Toxicology
Log Koc = MW nNO – 0.19 nHA CIC MAXDP Ts s = 0.35 F 6, 134 = MW: molecular weight nNO: number of NO bonds.
F.Consolaro 1, P.Gramatica 1, H.Walter 2 and R.Altenburger 2 1 QSAR Research Unit - DBSF - University of Insubria - VARESE - ITALY 2 UFZ Centre for Environmental.
MUTAGENICITY OF AROMATIC AMINES: MODELLING, PREDICTION AND CLASSIFICATION BY MOLECULAR DESCRIPTORS M.Pavan and P.Gramatica QSAR Research Unit, Dept. of.
P. Gramatica 1, H. Walter 2 and R. Altenburger 2 1 QSAR Research Unit - DBSF - University of Insubria - VARESE - ITALY 2 UFZ Centre for Environmental Research.
Use of Machine Learning in Chemoinformatics
What I SHOULD Have Learned in Life Science Class
Theme 5. Association 1. Introduction. 2. Bivariate tables and graphs.
Ecology & the Environment
26134 Business Statistics Week 5 Tutorial
CHEMISTRY 103 Fall 2017.
PHYSICO-CHEMICAL PROPERTIES MODELLING FOR ENVIRONMENTAL POLLUTANTS
Multivariate Analysis - Introduction
General Concepts in QSAR for Using the QSAR Application Toolbox
I can name the steps of the scientific method, in order.
Cautions About Correlation and Regression
Hierarchical Classification of Calculated Molecular Descriptors
SMA5422: Special Topics in Biotechnology
US Environmental Protection Agency
CHAPTER 2 Research Methods in Industrial/Organizational Psychology
Simultaneous equation system
Cautions about Correlation and Regression
Lesson Overview 1.1 What Is Science?.
Scientific Method.
Plymouth Environmental Research Centre
1 Department of Engineering, 2 Department of Mathematics,
1 Department of Engineering, 2 Department of Mathematics,
Lesson Overview 1.1 What Is Science?.
The Science of Predicting Outcome
LIVING OR NON-LIVING???.
1 Department of Engineering, 2 Department of Mathematics,
Approaches to Additivity
What is Regression Analysis?
Biology and You.
Ecology & the Environment
Regression assumptions Return to the paper Questions?
Simple Linear Regression
Lesson Overview 1.1 What Is Science?.
An Introduction to Correlational Research
Unit 1 Vocabulary Science Skills.
4.2 Cautions about Correlation and Regression
M.Pavan, P.Gramatica, F.Consolaro, V.Consonni, R.Todeschini
Lesson Overview 1.1 What Is Science?.
Presentation transcript:

QSAR MODELS FOR ALGAL TOXICITY FOR CONGENERIC AND NON-CONGENERIC COMPOUNDS P. Gramatica1, F. Consolaro1, M. Vighi2, A. Finizio2 and M. Faust3 1QSAR Research Unit , Dept. of Structural and Functional Biology, University of Insubria, Varese, Italy. 2Dept. of Environmental Sciences, University of Milano, Milano, Italy. 3Dept. of Biology/Chemistry, University of Bremen, Bremen, Germany. Web-site: http://andromeda.varbio.unimi.it/~QSAR/ INTRODUCTION The pollution of surface waters is rarely a matter of a single toxicant but aquatic organisms are typically exposed to numerous chemicals simultaneously or in sequence. Therefore, the assessment to hazardous potentials in aquatic toxicology cannot be restricted to considerations on individual compounds, but has to account for combined effects. QSAR models were developed on algal toxicity data for two groups of congeneric photosynthesis inhibitors (phenylureas and triazines) and a third group of heterogeneous chemicals with different mode of action. METHODS Independent variables were selected among a set of 172 molecular descriptors (count, topological, 3D-WHIM descriptors and log kow), by a Genetic Algorithm approach. QSAR models were developed by Ordinary Least Square regression (OLS) method and predictive capability was validated by the leave-more-out procedure. Models were produced for the three individual classes, for the two classes of photosynthesis inhibitors together and for the whole heterogeneous set of chemicals. QSAR MODELS Good models, with satisfying predictive capability, were obtained, nevertheless relevant differences were observed in the selection of variables. The role of specific parameters, such as directional WHIMs, capable to describe particular molecular features relevant for explaining the specific mode of action, is always relevant in QSAR models for congeneric chemicals. Increasing heterogeneity increases the role of structural descriptors, accounting for general molecular features, not related to specific mode of action. CONCLUSIONS The approach seems a promising tool, not only for the development of predictive QSAR but also for the interpretation of the relationships between molecular features and toxicological mode of action.