Volume 10, Issue 6, Pages (June 2017)

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Volume 10, Issue 6, Pages 899-902 (June 2017) Whole-Genome Sequencing and Analysis of the Chinese Herbal Plant Panax notoginseng Wei Chen, Ling Kui, Guanghui Zhang, Shusheng Zhu, Jing Zhang, Xiao Wang, Min Yang, Huichuan Huang, Yixiang Liu, Yong Wang, Yahe Li, Lipin Zeng, Wen Wang, Xiahong He, Yang Dong, Shengchao Yang Molecular Plant Volume 10, Issue 6, Pages 899-902 (June 2017) DOI: 10.1016/j.molp.2017.02.010 Copyright © 2017 The Author Terms and Conditions

Figure 1 Evolutionary and Functional Analysis of the P. notoginseng Genome Assembly. (A) Ortholog clustering analysis of the protein-coding genes in the P. notoginseng genome. (B) Phylogenetic tree and divergence time of P. notoginseng and 10 plant species. The phylogenetic tree was generated from 106 single-copy orthologs using the maximum-likelihood method. The divergence time range is shown by red blocks. The numbers beside the red blocks are the predicted divergence time. The pie charts show the proportion of expanded/contracted gene families in each plant species. (C) Intron/exon analysis of 12 predicted TERPENE SYNTHASE (TPS) genes in the P. notoginseng genome. Color blocks represent exons. Black lines between color blocks represent introns. The numbers above the lines are phase numbers for the corresponding introns. (D) Phylogenetic analysis of the TPS proteins (>500 aa) from P. notoginseng, A. thaliana, grape, sorghum, rice, P. patens, poplar, Abies grandis, and S. moellendorffii. The TPS subfamilies are labeled and shown in light blue blocks. Red branches represent P. notoginseng TPSs. Ppse_ynau_026470, 024646, 011415, 002658, 036623 belong to the TPS-a1 subfamily. Ppse_ynau_008716, 015983, 008714, 010120, 036618 belong to the TPS-b subfamily. Ppse_ynau_029077 belongs to the TPS-e/f subfamily. (E) Pearson correlation analysis of the gene expression levels of 12 TPS genes. (F) Pearson correlation analysis of the TPS gene expression patterns among fruit (Fr), stem (St), leaf (Le), flower (Fl), primary root (Pr), and secondary root (Sr). Molecular Plant 2017 10, 899-902DOI: (10.1016/j.molp.2017.02.010) Copyright © 2017 The Author Terms and Conditions