Plant and Animal Genome XIX

Slides:

Advertisements

Similar presentations

Working Group Meeting 2013 Objective 3: Deploy tools to increase user-specified flexible queries.

Advertisements

Sook Jung, Taein Lee, Stephen Ficklin, Kate Evans, Cameron Peace and Dorrie Main.

How to use GDR, the Genome Database for Rosaceae Sook Jung, Stephen Ficklin, Taein Lee, Chun-Huai Cheng, Anna Blenda, Jing Yu, Sushan Ru, Kate Evans, Cameron.

GDR, the Genome Database for Rosaceae, in Chado and Tripal Sook Jung, Stephen Ficklin, Taein Lee, Chun-Huai Cheng, Anna Blenda, Sushan Ru, Ping Zheng,

GDR/CottonGen: Converting legacy sites to Tripal Sook Jung, Jing Yu, Taein Lee, Chun-Huai Cheng, Stephen Ficklin, Dorrie Main.

Integrating Phenotypic Data With Genomic, Genetic and Genotypic Data Using Chado Sook Jung, Taein Lee, Stephen Ficklin, Jing Yu, Dorrie Main.

Ten years of GDR Current Resources and Functionality S Jung, T Lee, S Ficklin, CH Cheng, P Zheng, A Blenda, S Ru, K Evans, C Peace, N Oraguzie, AG Abbott,

GDR What’s New and What’s Next Dorrie Main, Sook Jung, Stephen Ficklin, Taein Lee, Chun-Huai Cheng, Anna Blenda, Jing Yu, Ping Zheng, Sushan Ru, Julia.

New Data and Functionality of GDR, the Genome Database for Rosaceae Sook Jung, Taein Lee, Stephen Ficklin, Chun-Huai Cheng, Ping Zheng, Anna Blenda, Sushan.

Help Desk Update January 2010 GMOD Meeting January 2010 Dave Clements GMOD Help Desk US National Evolutionary Synthesis Center (NESCent)

GenSAS: Genome Sequence Annotation Server, a Tool for Online Annotation and Curation Dorrie Main, Taein Lee, Ping Zheng, Sook Jung, Stephen P. Ficklin,

Update in GDR, The Genome Database for Rosaceae S Jung, T Lee, S Ficklin, CH Cheng, I Cho, P Zheng, K Evans, C Peace, N Oraguzie, A Abbott, D Layne, M.

GMOD: Building Blocks for a Model Organism System Database Lincoln Stein, CSHL.

GMOD in the Cloud Genome Informatics November 3, 2011 Scott Cain GMOD Project Coordinator Ontario Institute for Cancer Research

WFleaBase Daphnia Genome Database from Common Components Daphnia Genomic Consortium Meeting, Sept Don Gilbert,

Introduction to NRSP databases and other breeding databases.

Building Database Resources For Translational Research in Rosaceae Sook Jung, Taein Lee, Stephen Ficklin, Chun-Huai Cheng, Anna Blenda, Sushan Ru, Ping.

Help Desk Update September 2010 GMOD Meeting September 2010 Dave Clements GMOD Help Desk US National Evolutionary Synthesis Center (NESCent)

{ Web Apollo A Web-based Genomics Annotation Editing Platform Ed Lee, Gregg Helt, Justin Reese, Monica Munoz-Torres*, Christopher Childers, Rob Buels,

Jing Yu 1, Sook Jung 1, Chun-Huai Cheng 1, Stephen Ficklin 1, Taein Lee 1, Ping Zheng 1, Don Jones 2, Richard Percy 3, Dorrie Main 1 1. Washington State.

Jing Yu 1, Sook Jung 1, Chun-Huai Cheng 1, Stephen Ficklin 1, Taein Lee 1, Ping Zheng 1, Don Jones 2, Richard Percy 3, Dorrie Main 1 1. Washington State.

Comparative Genomics Tools in GMOD GMOD.org Dave Clements 1, Sheldon McKay 2, Ken Youns-Clark 2, Ben Faga 3, Scott Cain 4, and the GMOD Consortium 1 National.

The GMOD Project: Creating Reusable Software Components for Genome Data Scott Cain GMOD Project Coordinator Cold Spring Harbor Laboratory.

Gramene’s Outreach Program. Outreach Components Workshops Website Improvements / Additions Public Announcements High School Outreach Collaborators and.

How many vegetarians are there? And... Before I do anything...

Lacey-Anne Sanderson A Toolkit for Construction of Genomic and Genetic Websites.

WebApollo: A Web-Based Sequence Annotation Editor for Community Annotation Ed Lee, Gregg Helt, Nomi Harris, Mitch Skinner, Christopher Childers, Justin.

Jing Yu, Sook Jung, Chun-Huai Cheng, Stephen Ficklin, Ping Zheng, Taein Lee, Richard Percy, Don Jones, Dorrie Main.

Jing Yu 1, Sook Jung 1, Chun-Huai Cheng 1, Stephen Ficklin 1, Taein Lee 1, Ping Zheng 1, Don Jones 2, Richard Percy 3, Dorrie Main 1 1. Washington State.

GMOD Help Desk Dave Clements. GMOD Help Desk What I've been doing What I'm planning on doing What should I be doing? How am I doing?

GMOD: Managing Genomic Data from Emerging Model Organisms Dave Clements 1, Hilmar Lapp 1, Brian Osborne 2, Todd J. Vision 1 1 National Evolutionary Synthesis.

GDR in Drupal facilitating community building and efficient maintenance.

Jing Yu 1, Sook Jung 1, Chun-Huai Cheng 1, Stephen Ficklin 1, Taein Lee 1, Ping Zheng 1, Don Jones 2, Richard Percy 3, Dorrie Main 1 1. Washington State.

Got genom e? Community Meetings GMOD.org The GMOD community meets semi- annually to discuss GMOD components, best practices,

GMOD Meeting August 6-7, 2009 Oxford, UK Scott Cain, PhD. GMOD Project Coordinator Ontario Institute for Cancer Research

GBrowse Population Display and CMap SMBE 2009 Ben Faga.

TRPGR Gramene: A Platform for Comparative Plant Genomics Doreen Ware USDA ARS Cold Spring Harbor Laboratory Pankaj Jaiswal Oregon State University Joshua.

5/8/06 Scott Cain Stein Lab Retreat, 2006 GMOD Update Progress since last year  Software releases  Notable new users  Schema enhancements  New GMOD.

What's new with GMOD Scott Cain GMOD Coordinator

GMOD – What Next?. Application Areas Genome –Single annotation –Comparative annotation Genetics –Stocks, strains, mutants –QTL –Variation Protein annotation.

GMOD Meeting San Diego January 15-16, 2009 Scott Cain GMOD Project Coordinator Ontario Institute for Cancer Research.

Jing Yu, Sook Jung, Chun-Huai Cheng, Taein Lee, Katheryn Buble, Ping Zheng, Jodi L. Humann, Deah McGaughey, Heidi Hough, Stephen P. Ficklin, B. Todd Campbell,

The State of GMOD March 2011 GMOD Meeting US National Evolutionary Synthesis Center (NESCent) 5 March 2011 Sponsored by Scott Cain GMOD Project Coordinator.

Progress on TripalBIMS Breeding Information Management System in Tripal Sook Jung, Taein Lee, Chun-Huai Chen, Jing Yu, Ksenija Gasic, Todd Campbell, Kate.

Jing Yu 1, Sook Jung 1, Chun-Huai Cheng 1, Stephen Ficklin 1, Taein Lee 1, Ping Zheng 1, Don Jones 2, Richard Percy 3, Dorrie Main 1 1. Washington State.

GDR Workshop Tuesday 21st, 2016 RGC8 2016

5/12/2018 Genome Database for Rosaceae New Data and New Functionality

“Big Data”, tree fruit and the Genome Database for Rosaceae

Resources Available for Fragaria Research through the Genome Database for Rosaceae Dorrie Main, Sook Jung, Chun-Huai Cheng, Stephen Ficklin, Taein Lee,

Behavior and Phenotype in GMOD Natural Diversity in GMOD

Gramene Technical Improvements

TreeGenes & Tripal treegenesdb.org Emily Grau

Genome Browsers.

Bioinformatics Tools for Comparative Genomics of Vectors

9/11/2018 Genome Database for Rosaceae Since RGC7

CottonGen: An Up-to-Date Resource Enabling Genetics, Genomics and Breeding Research for Crop Improvement Plant and Animal Genome Conference XXV Jing Yu1,

The Cool Season Food Legume Database: An Integrated Resource for Basic, Translational and Applied Research Dorrie Main, Chun-Huai Cheng, Stephen Ficklin,

the Genome Database for Rosaceae: New Data and Functionality

CottonGen An Online Resource for the Cotton Community

Plant and Animal Genome Conference XXIV

Ensembl Genomes: Overview Poznań, 27th-28th June 2013

got genome? Community Meetings Databases Training GMOD.org

Plant and Animal Genome XVIII

for the Cotton Community

Updates and Future Direction

Genome Database for Rosaceae:

CottonGen: Enabling Cotton Research through Big-Data Analysis and Integration Jing Yu, Sook Jung, Chun-Huai Cheng, Taein Lee, Katheryn Buble, Ping Zheng,

New Data and Functionality in NRSP10 Databases

2016 Beltwide Cotton Conference

For more information contact:

Presentation transcript:

GMOD @ Plant and Animal Genome XIX GMOD Users Gramene RAP-DB ConiferGDB TAIR MaizeGDB SGN TreeGenes SoyBase CottonDB MOCCAdb GDR GnpIS + hundreds more GMOD Tools Chado Apollo GBrowse CMap Tripal GBrowse_syn Ergatis Textpresso BioMart JBrowse MAKER Galaxy InterMine … Database Resources at the EBI: Ensembl (including BioMart) Sunday, 8:00-9:00am, California Room, Bert Overduin The Generic Genome Browser: A Hands on Workshop Sunday, 1:30-3:40pm, California Room, Scott Cain Using Gramene (including CMap) Tuesday, 3:50-6:00pm, California Room, Ken Youens-Clark MAKER: An easy to use genome annotation pipeline Wednesday, 10:30-11:30am, Pacific Salon 3, Carson Holt Galaxy: Analyze, Visualize, Communicate Wednesday, 11:30am-12:30pm, Pacific Salon 3, Dan Blankenberg JBrowse: A Next Generation Genome Browser Wednesday, 1:30-2:30pm, Pacific Salon 3, Mitch Skinner Tripal: A Construction Toolkit for Online Genomic Databases Wednesday, 2:30-3:30pm, Pacific Salon 3, Stephen Ficklin GMODviews: A Configurable Interface for GMOD Databases & Tools Wednesday, 3:45-4:00pm, Pacific Salon 3, Michael Caudy GBrowse_syn: The Generic Synteny Browser Wednesday, 4:00-5:00pm, Pacific Salon 3, Robert Buels GMOD: Organize Annotate and Visualize Your Data Workshops Wednesday 10:20 - 5:00 Pacific Salon 3 Developing a Comprehensive Genomics, Genetics & Breeding DB for Cacao Sunday, 3:45-4:00pm, Pacific Salon 6 & 7, Ping Zheng How to Use MetaCyc and the Pathway Tools Software in Local Mode Sunday, 4:30-4:50pm, California Room, Lukas Mueller Talks P798: CottonDB: An Integrated Repository Resource for Cotton P800: Genome Annotation and Report System: An Integrated System for Structural & Functional Genome Annotation P805: GnpIS, A Portal andInformation System to Bridge Genetics and Genomics Pland & Fungi Data P814: Informatics for Turbo-charged Comparative Biology: Highlights from the GMOD Evo Hackathon P818: A Complete Community Annotation System using GMOD Tools P828: GBrowse 2.2: Fast, Friendly, and Sociable P888: GDR (Genome Database for Rosaceae) Building Resources for Translational Research in Rosaceae Posters + and at least 8 other talks and 9 more posters by GMOD users (see http://gmod.org/wiki/PAG_2011) http://gmod.org Got genome?