The Conformational Landscape of Serinol

Slides:



Advertisements
Similar presentations
The Delicate Balance of Hydrogen Bond Forces in D-Threoninol 19 Di Zhang, Vanesa Vaquero Vara, Brian C. Dian and Timothy S. Zwier Zwier Research Group,
Advertisements

68th OSU International Symposium on Molecular Spectroscopy TH08
Microsolvation of  -propiolactone as revealed by Chirped-Pulse Fourier Transform Microwave Spectroscopy Justin L. Neill, Matt T. Muckle, Daniel P. Zaleski,
CHIRPED-PULSE FOURIER-TRANSFORM MICROWAVE SPECTROSCOPY OF THE PROTOTYPICAL C-H…π INTERACTION: THE BENZENE…ACETYLENE WEAKLY BOUND DIMER Nathan W. Ulrich,
HYDROGEN BONDS IN DNA NHO Distance between the N and O Covalent bond hydrogen bond Bond angle between N, H and O.
Microwave spectrum of furfuryl alcohol Roman A. Motiyenko, Manuel Goubet, Thérèse R. Huet, Laurent Margulès, Georges Wlodarczak PhLAM Laboratory, University.
Case Studies Class 5. Computational Chemistry Structure of molecules and their reactivities Two major areas –molecular mechanics –electronic structure.
Galen Sedo, Jamie L. Doran, Shenghai Wu, Kenneth R. Leopold Department of Chemistry, University of Minnesota A Microwave Determination of the Barrier to.
THE CONFORMATIONAL BEHAVIOUR OF GLUCOSAMINE I. PEÑA, L. KOLESNIKOVÁ, C. CABEZAS, C. BERMÚDEZ, M. BERDAKIN, A. SIMAO, J.L. ALONSO Grupo de Espectroscopia.
Chirality of and gear motion in isopropyl methyl sulfide: Fourier transform microwave study Yoshiyuki Kawashima, Keisuke Sakieda, and Eizi Hirota* Kanagawa.
1 Broadband Chirped-Pulse Fourier- Transform Microwave (CP-FTMW) Spectroscopic Investigation of the Structures of Three Diethylsilane Conformers Amanda.
The inversion motion in the Ne – NH 3 van der Waals dimer studied via microwave spectroscopy Laura E. Downie, Julie M. Michaud and Wolfgang Jäger Department.
Observation of the weakly bound (HCl) 2 H 2 O cluster by chirped-pulse FTMW spectroscopy Zbigniew Kisiel, a Alberto Lesarri, b Justin Neill, c Matt Muckle,
Gas Phase Conformational Distributions
Maria Eugenia Sanz, Carlos Cabezas, Santiago Mata, José L. Alonso The Rotational Spectrum of Tryptophan.
The Low Frequency Broadband Fourier Transform Microwave Spectroscopy of Hexafluoropropylene Oxide, CF 3 CFOCF 2 Lu Kang 1, Steven T. Shipman 2, Justin.
Microwave Spectra and Structures of H 2 S-CuCl and H 2 O-CuCl Nicholas R. Walker, Felicity J. Roberts, Susanna L. Stephens, David Wheatley, Anthony C.
THE PURE ROTATIONAL SPECTRA OF THE TWO LOWEST ENERGY CONFORMERS OF n-BUTYL ETHYL ETHER. B. E. Long, G. S. Grubbs II, and S. A. Cooke RH13.
Daniel P. Zaleski, Hansjochen Köckert, Susanna L. Stephens, Nick R. Walker School of Chemistry, Bedson Building, Newcastle University, Newcastle upon Tyne,
Volker Lutter, Laborastrophysik, Universität Kassel 69 th ISMS Champaign-Urbana, Illinois HIGH RESOLUTION INFRARED SPECTROSCOPY AND SEMI-EXPERIMENTAL STRUCTURES.
Microwave Studies of Glycerol F.J. Lovas, and D.F Plusquellic NIST and V.V. Ilyushin and R.A. Motiyenko Institute of Radio Astronomy of NASU.
The Pure Rotational Spectrum of Pivaloyl Chloride, (CH 3 ) 3 CCOCl, between 800 and MHz. Garry S. Grubbs II, Christopher T. Dewberry, Kerry C. Etchison,
1 -RH06- PROTON DONOR/ACCEPTOR PROPENSITIES OF AMMONIA ROTATIONAL STUDIES OF ITS MOLECULAR COMPLEXES WITH ORGANIC MOLECULES 64 th OSU International Symposium.
Grupo de Espectroscopia Molecular, Unidad Asociada CSIC Laboratorios de Espectroscopia y Bioespectroscopia Edificio Quifima. Parque Científico Universidad.
Rotationally-Resolved Spectroscopy of the Bending Modes of Deuterated Water Dimer JACOB T. STEWART AND BENJAMIN J. MCCALL DEPARTMENT OF CHEMISTRY, UNIVERSITY.
61st OSU International Symposium on Molecular Spectroscopy RI12 Rotational spectrum, electric dipole moment and structure of salicyl aldehyde Zbigniew.
Equilibrium Molecular Structure and Spectroscopic Parameters of Methyl Carbamate J. Demaison, A. G. Császár, V. Szalay, I. Kleiner, H. Møllendal.
Fourier transform microwave spectra of CO–dimethyl sulfide and CO–ethylene sulfide Akinori Sato, Yoshiyuki Kawashima and Eizi Hirota * The Graduate University.
THE MICROWAVE STUDIES OF GUAIACOL (2-METHOXYPHENOL), ITS ISOTOPOLOGUES & VAN DER WAALS COMPLEXES Ranil M. Gurusinghe, Ashley Fox and Michael J. Tubergen,
Effective C 2v Symmetry in the Dimethyl Ether–Acetylene Dimer Sean A. Peebles, Josh J. Newby, Michal M. Serafin, and Rebecca A. Peebles Department of Chemistry,
Determination of Torsional Barriers of Itaconic Acid and N-acetylethanolamine using Chirped-pulsed FTMW Spectroscopy. Josiah R. Bailey, Timothy J. McMahon,
Perfluorobutyric acid and its monohydrate: a chirped pulse and cavity based Fourier transform microwave spectroscopic study Javix Thomas a, Agapito Serrato.
Intermolecular Interactions between Formaldehyde and Dimethyl Ether and between Formaldehyde and Dimethyl Sulfide in the Complex, Investigated by Fourier.
1 The r 0 Structural Parameters of Equatorial Bromocyclobutane, Conformational Stability from Temperature Dependent Infrared Spectra of Xenon Solutions,
The complete rotational spectrum of CH 3 NCO up to 376 GHz Zbigniew Kisiel, a Lucie Kolesnikova, b Jose L. Alonso, b Ivan R. Medvedev, c Sarah Fortman,
High Resolution Electronic Spectroscopy of 9-Fluorenemethanol (9FM) in the Gas Phase Diane M. Mitchell, James A.J. Fitzpatrick and David W. Pratt Department.
The Rotational Spectrum of the Water–Hydroperoxy Radical (H 2 O–HO 2 ) Complex Kohsuke Suma, Yoshihiro Sumiyoshi, and Yasuki Endo Department of Basic Science,
 Small molecules forming the elementary blocks of biomolecules: amino acids, small peptides, nucleic acids, sugars… Can serve as validation tools relatively.
Rotational Spectra of Adducts of Formaldehyde with Freons Qian Gou, 1 Gang Feng, 1 Luca Evangelisti, 1 Montserrat Vallejo-López, 2 Alberto Lesarri, 2 Walther.
A NUCLEOSIDE UNDER OBSERVATION IN THE GAS PHASE: A ROTATIONAL STUDY OF URIDINE I. PEÑA, J.L. ALONSO Grupo de Espectroscopia Molecular. Unidad asociada.
International Symposium on Molecular Spectroscopy
Max Planck Institute for the Structure and Dynamics of Matter
Rotational spectra of C2D4-H2S, C2D4-D2S, C2D4-HDS and 13CH2CH2-H2S complexes: Molecular symmetry group analysis Mausumi Goswami and E. Arunan Inorganic.
The microwave spectroscopy study of 1,2-dimethoxyethane
Rebecca A. Peebles,a Prashansa B. Kannangara,a Brooks H
ROTATIONAL SPECTROSCOPY OF THE METHYL GLYCIDATE-WATER COMPLEX
Carlos Cabezas and Yasuki Endo
The microwave spectrum of lactaldehyde, the simplest chiral sugar.
SUSANA BLANCO Departamento de Química Física y Química Inorgánica
L. Evangelisti,a,c C. Perez,b,c B.H. Patec
SEVEN CONFORMERS OF PIPECOLIC ACID IDENTIFIED IN THE GAS PHASE
Characterization of Intermolecular Interactions in the
G. S. Grubbs II*, S. A. Cooke⧧, and Stewart E. Novick*,
Hiroyuki Ozeki, Rio Miyahara, Hiroto Ihara, Satoshi Todaka,
THE MILLIMETER-WAVE SPECTRUM OF VINYL ACETATE
Aimee Bell, Omar Mahassneh, James Singer,
Remeasurement* of the Microwave Spectrum of
CAITLIN BRAY CARA RAE RIVERA E. A. ARSENAULT DANIEL A. OBENCHAIN
A STUDY OF THE FORMAMIDE-(H2O)3 COMPLEX BY MICROWAVE SPECTROSCOPY
Microwave spectra of 1- and 2-bromobutane
THE STRUCTURE OF PHENYLGLYCINOL
LABORATORY AND ASTRONOMICAL DISCOVERY OF HYDROMAGNESIUM ISOCYANIDE
Fourier transform microwave spectra of n-butanol and isobutanol
ROTATIONAL SPECTRA OF HYDROGEN BONDED NETWORKS OF AMINO ALCOHOLS
Ashley M. Anderton, Cori L. Christenholz, Rachel E. Dorris, Rebecca A
The rotational spectrum of the urea isocyanic acid complex
BROADBAND MICROWAVE SPECTROSCOPY AS A TOOL TO STUDY DISPERSION INTERACTIONS IN CAMPHOR-ALCOHOL SYSTEMS MARIYAM FATIMA, CRISTÓBAL PÉREZ, MELANIE SCHNELL,
Wei Lin, Anan Wu, Zin Lu, Daniel A. Obenchain, Stewart E. Novick
THE MICROWAVE SPECTRUM AND UNEXPECTED STRUCTURE OF THE BIMOLECULAR COMPLEX FORMED BETWEEN ACETYLENE AND (Z)-1-CHLORO-2-FLUOROETHYLENE Nazir D. Khan, Helen.
COMPREHENSIVE ANALYSIS OF INTERSTELLAR
Presentation transcript:

The Conformational Landscape of Serinol M. E. Sanz, D. Loru, Department of Chemistry, King’s College London, UK I. Peña, J. L. Alonso Grupo de Espectroscopía Molecular Universidad de Valladolid, Spain

Motivation Serinol Conformational investigation b-amino alcohols: vicinal amino and alcohol groups Great variety of intra- and intermolecular hydrogen bonds b-amino alcohols derived from a-amino acids are used in the synthesis of enantiomerically pure bioactive compounds Hydrophilic head of sphingosine sphingosine Constituent of artificial nucleic acids better understanding of stereocontrol Conformational investigation molecular recognition, self assembly

Chirped Pulse FTMW Spectroscopy S. Mata et al., J. Mol. Spectrosc. 280, 91 (2012) I. Peña et al., Phys. Chem. Chem. Phys. 15, 18243 (2013)

Serinol Rotational Spectrum: CP-FTMW * * photofragmentation lines

Rotational Spectrum

Serinol ga gG gg aa ag Gg > 200 conformers Families of conformers O4-C1-C2-C3 C1-C2-C3-O5 ga gG gg OH OH OH OH NH2 NH2 NH2 g  -60 G  +60 a  180 OH OH aa ag Gg NH2 NH2 NH2 OH OH OH OH OH OH

Computational > 200 conformers Lowest-energy conformers? Semiempirical and ab initio calculations 1. AM1 method ~ 70 conformers within 25 kJ/mol 2. MP2/6-311++G(d,p) Geometry optimizations and vibrational frequency calculations

Computational ga gG aa Gg ag gg Families of conformers 22 conformers within 1000 cm-1 Families of conformers ga gG aa Gg ag gg MP2/6-311++G(d,p)

Serinol Assignment and Identification

Serinol Assignment and Identification ga1 ga2 11,0 ← 00,0 2 ← 1 F′ ← F′′ = 2 ← 1 1 ← 1 1 ← 1 0 ← 1 0 ← 1 ga1 ga2

Serinol Assignment and Identification

Serinol Assignment and Identification Intense c-type transitions

Serinol Assignment and Identification a-type transitions b-type transitions c-type transitions ~ 600 kHz splitting no splitting no splitting 21,2 ← 11,1 21,2 ← 10,1 21,1 ← 10,1 3 ← 2 3 ← 2 3 ← 2 0+ 0- 2 ← 1 2 ← 1 2 ← 1 0- 1 ← 0 1 ← 0 1 ← 0 0+ 0+ 0- 2 ← 2 1 ← 1 2 ← 2 1 ← 1

Serinol Assignment and Identification a-type transitions b c a-type transitions Conformer which tunnels between two equivalent configurations ~ 600 kHz splitting 21,2 ← 11,1 Small splittings motion of hydrogen atoms 3 ← 2 0+ 0- 2 ← 1 Inversion of ma dipole moment component with tunneling motion 0- 1 ← 0 0+ 0+ 0-

Serinol Assignment and Identification a-type transitions b c a-type transitions ~ 600 kHz splitting 21,2 ← 11,1 3 ← 2 0+ 0- 2 ← 1 0- 1 ← 0 glycerol 0+ 0+ 0- Ilyushin, Moltyenko, Lovas, Plusquellic, J. Mol. Spectrosc. 251, 129 (2008)

Serinol Assignment and Identification Similar intensities of a- and b-type transitions c-type transitions ~ 10 times weaker

Serinol Intramolecular interactions O−H···O O−H···N N−H···O O−H···N

ga1 > gG1 > ga2 ≈ aa1 > ag1 Serinol Relative abundances ga1 > gG1 > ga2 ≈ aa1 > ag1 E ag1 20:6:3:3:1 aa1 ga2 gG1 ga1 MP2/6-311++G(d,p) Gibbs energies 0 cm-1 115 cm-1 159 cm-1 231 cm-1 495 cm-1

Serinol Lower-energy conformers MP2/6-311++G(d,p) DG298 (cm-1)

Serinol Conformational relaxation?

Serinol Conformational relaxation ga family ga1 ga3 ga4 ga2 E/cm-1 HOCC E/cm-1 ga4 ga2 HOCC

Serinol Conformational relaxation aa family E/cm-1 aa3 aa1 aa2 HOCC

Serinol Conclusions Five conformers of serinol identified from the analysis of the rotational spectrum Stabilised by intramolecular hydrogen bonds All conformations very close in energy Behaviour similar to threoninol Vaquero-Vara et al., J.Phys.Chem. A (2014) ASAP serinol gG serinol ag serinol ag serinol aa

Thank you for your attention Acknowledgements Donatella Loru Isabel Peña Santiago Mata Carlos Cabezas José L. Alonso Agustín Martín Lucie Kolesnicová Celina Bermúdez Susana Blanco Juan Carlos López Funding Thank you for your attention