Heatmap summarizing the significant (P < 0

Slides:

Advertisements

Similar presentations

IA-DMM Additional Evaluation Efforts. Evaluation questions focused on areas not addressed by FSU Evaluation Plan Evaluation Measures Evaluation Results.

Advertisements

Jack Lee Lincoln University, Canterbury, New Zealand .

Comparisons of “even” mock communities (a) and “staggered” mock communities (b) sequenced by MiSeqPE300 and HiSeqPE250. Comparisons of “even” mock communities.

Checklist for Site Reconnaissance (Sabatini et al_2002)

Nonmetric multidimensional scaling (NMDS) ordination of variation in bacterial community structure of tree phyllosphere along a gradient of urban intensity.

مهارات الاتصال والتواصل Communication Skills

مهارات الاتصال والتواصل Communication Skills

Multivariate community analysis

فرایند تسهیلگری در مددکاری جامعه ای

Taxonomic composition of subway microbial communities.

Microbial community dissimilarity.

Microbial diversity was broadly compared across three unique built-environment study sites for 16S rRNA amplicon and shotgun metagenome sequencing. Microbial.

(A) Hierarchical clustering was performed to identify groups of patients with similar RNASeq expression of 20 genes associated with reduced survivability.

Surveys, Archival, & Observations

Map and population demographic metadata of sample sites in New York City. Map and population demographic metadata of sample sites in New York City. Microbial.

Microbial diversity of the 10 body locations sampled.

Voluntary but not forced exercise alters food consumption in mice.

Fluoride affects stool-derived taxa found in the oral cavity.

Screenshot of JCVI's Advanced Reference Viewer ( jcvi

Putative MBTA microbial community sources.

Collection of samples from MBTA trains and stations.

Life expectancy and baseline BP: Male participants

Temporal and spatial patterns.

Nonmetric multidimensional scaling (NMDS) plots of fecal and biopsy sample-based Bray-Curtis distances computed from the relative abundances of the 258.

Null modeling approach for quantifying influences of assembly processes and connecting those processes to biogeochemical function. Null modeling approach.

Population characteristics.

Distributions of pairwise correlation coefficients from cooccurrence models computed from temporal data (fecal) and spatial data (biopsy samples; means.

Structure of benthic microbial communities of residential and industrial land use types before and after two rain events in urban waterways are shown.

Heatmaps of differential OTUs

Relative abundances (percent) of genes that code for key enzymes involved in direct and indirect butyrate production during glucose fermentation at different.

Bacterial community dissimilarity, as measured by weighted UniFrac, a quantitative measurement (a), and unweighted UniFrac, a qualitative measurement (b),

Distribution of microbial functions in urban waterways.

Comparison of the original ITS primer pair and the new, modified ITS primer pair. Comparison of the original ITS primer pair and the new, modified ITS.

Comparison of the modified 515f/806rB V4 primer pair and the 515f (modified)/926r primer pair. Comparison of the modified 515f/806rB V4 primer pair and.

(a) Hierarchical clustering of closed-reference OTUs based on mean pH; (b) balance of low-pH-associated organisms (3.8 < mean pH < 6.7) and high-pH-associated.

Experimental design. Experimental design. (a) Configuration of the sampling site in Flagstaff office 1. This configuration was similar to those set up.

C.2.10 Sample Questions.

Microbial community structure analysis.

C.2.8 Sample Questions.

Transcription of cellulolytic genes disaggregated by genome.

C.2.8 Sample Questions.

Figure 3 Multiple sclerosis (MS) immunomodulatory treatments interferon-β (IFNB) and fingolimod (FTY720) result in global perturbation of the immune system.

Framework for integrating taxonomic and metabolomic data.

Altered mycobiota and bacterial-fungal correlation in AS patients receiving different therapeutic regimens. Altered mycobiota and bacterial-fungal correlation.

Building groupings based on culture density, diversity, and drug resistance phenotypes. Building groupings based on culture density, diversity, and drug.

Comparisons of “even” mock communities (a) and “staggered” mock communities (b) sequenced by MiSeqPE300 and HiSeqPE250. Comparisons of “even” mock communities.

Microbial communities of the differently treated mice with lupus cluster separately after treatment. Microbial communities of the differently treated mice.

Shifts in the microbial community compositions of the control and antibiotic groups. Shifts in the microbial community compositions of the control and.

(a) A band table where the y axis data represent individual OTUs and the x axis data represent samples. (a) A band table where the y axis data represent.

Microbial differences found between TPC- and PBS-treated mice with lupus. Microbial differences found between TPC- and PBS-treated mice with lupus. (A)

(A) Amphibian SourceTracker analysis reveals that water is the only sample type that obtains a notable amount of its microbial community from amphibian.

Strong parallelism in mutated genes defines adaptations to the environment of CF patient lungs. Strong parallelism in mutated genes defines adaptations.

Differences in Verrucomicrobia genera across plant community types.

Figure 1. Microbe Directory heatmap.

Pairwise UniFrac distances for each consecutive-time pair from the same sample, aggregated and smoothed to distribution functions before and while taking.

Sequence variation of 16S rRNA gene primer-binding sites.

Heatmap showing Spearman’s rho values for significant correlations between weed abundances and bacterial classes (i.e., OTU data pooled at the class level;

Principal-coordinate analysis (PCoA) (Hellinger distance metric) of plant community (A), soil chemistry (B), 16S rRNA gene (prokaryotic) (C), and ITS (fungal)

Subcategorical structure within animate and inanimate categories in TEO, TE, and PFC. a, The bar graphs show the mean dissimilarities (percentile of 1.

PCoA plots of subgingival samples with disease classification overlaid

Health Centers Are Expanding Access to Care and the Timeliness of Care

Relationships between antimicrobial chemicals, features of the built environment, and microbial communities. Relationships between antimicrobial chemicals,

Category Quantity Secondary school 3 Student participant

Relative proportions of taxa and UPGMA hierarchical clustering of the mock communities. Relative proportions of taxa and UPGMA hierarchical clustering.

Acarbose reversibly changes the structure of the murine gut community.

Variations in beta and alpha diversity of gut microbiome bacterial communities in relation to presence of Blastocystis. Variations in beta and alpha diversity.

Variations in beta and alpha diversity of gut microbiome eukaryotic communities explained by presence of Blastocystis. Variations in beta and alpha diversity.

Pathway-based analysis of the differentially expressed proteins in colonic mucosa. Pathway-based analysis of the differentially expressed proteins in colonic.

Higher sub-OTU resolution, in combination with SEPP phylogenies, exposed relevant ecological signals. Higher sub-OTU resolution, in combination with SEPP.

Presentation transcript:

Heatmap summarizing the significant (P < 0 Heatmap summarizing the significant (P < 0.05) metadata factors that were collected from a participant survey. Heatmap summarizing the significant (P < 0.05) metadata factors that were collected from a participant survey. Categories with higher F values by PERMANOVA have higher variation in community dissimilarity within 10 body locations. White regions of the heatmap represent nonsignificant results. Body locations and metadata categories were arranged into dendrograms using the Bray-Curtis dissimilarity metric. Back, navel, and torso sites were associated with single samples, which likely contributed to fewer significant F values compared to other locations that were sampled on each side of the body. Ashley A. Ross et al. mSystems 2017; doi:10.1128/mSystems.00043-17