Meatgenome Analysis Project Bioinformatics 301

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Presentation transcript:

Meatgenome Analysis Project Bioinformatics 301 Prepared by Michael kassa

Read and similarities OCTHSE.ATYB5997-B2 and OCTHSE.ATYB5997-G2

Extended Read Brown = OctHSe. ATY 5997-b2 (my Read) Green =OctHSe Extended Read Brown = OctHSe.ATY 5997-b2 (my Read) Green =OctHSe.APN4301-b2; Blue = OctHSe.APN-b2; orange =OctHSe.APNO3102-b2 1 905 1014 1606 1872 2398 2525 3326

Predicted Genes

NCBI Blast Result protein database using a translated nucleotide

NCBI Blast Result protein database using a translated nucleotide continued….

Reading- Frames-Of the extended sequence

Reading- Frames-Of the extended sequence from BioBike Results are similar with the results I found using NCBI

Protein Result from BioBike NC_007652.p-gene0008 Sequence-Length =585 Class – Eukaryotic- Virus Organism- Metapneumovirus Human metapneumovirus (hMPV) was isolated for the first time in 2001 in the Netherlands, by using the RAP-PCR (RNA arbitrarily primed PCR) technique for identification of unknown viruses growing in cultured cells.