Modelling noise in second generation sequencing forensic genetics STR data using a one-inflated (zero-truncated) negative binomial model  Søren B. Vilsen,

Slides:



Advertisements
Similar presentations
The most efficient STR loci in forensic genetics in population of central Poland R. Jacewicz, M. Jedrzejczyk, J. Berent Forensic Science International:
Advertisements

A comparison of AmpFlSTR Identifiler™ Kit versus AmpFlSTR Identifiler Plus™ Kit in challenging bone samples by using normal and increased PCR cycle number 
A comparison of AmpFlSTR Identifiler™ Kit versus AmpFlSTR Identifiler Plus™ Kit in challenging bone samples by using normal and increased PCR cycle number 
A. Verzeletti, V. Cortellini, S. Cisana, S. Pretto, N. Cerri, F
C. Hussing, M.L. Kampmann, H.S. Mogensen, C. Børsting, N. Morling 
Activity level in the hierarchy of propositions in case of the People of the State of California v. Orenthal James Simpson analyzed using Bayesian network 
S. Alimat, S. Hadi, W. Goodwin 
S. Severini, M. Lancia, S. Massetti, A. Coletti, L. Carlini, E
Statistical model for degraded DNA samples and adjusted probabilities for allelic drop- out  Torben Tvedebrink, Poul Svante Eriksen, Helle Smidt Mogensen,
An evaluation of miniSTR markers for casework applications
PhyloTree Build 17: Growing the human mitochondrial DNA tree
A priori probabilities in Y23 mixture analysis: Non-contributor experiments using simulated powerplex® Y23 Y-STR mixtures  D. Moore, T. Clayton, J. Thomson 
Performance of the RapidHIT™200
A. Barbaro, P. Cormaci, G. Falcone 
Use of universal reporter primers in multiplex PCR of autosomal loci
Characterization of mutations and sequence variations in complex STR loci by second generation sequencing  Sigrun Dalsgaard, Eszter Rockenbauer, Chiara.
Decrease DNA contamination in the laboratories
The effect of increased cycle numbers using the Quantifiler® Duo DNA Quantification Kit (AB) on the detection of minute amounts of male DNA in mixtures.
Juliana G. Aquino, Juliana Jannuzzi, Elizeu F. Carvalho, Leonor Gusmão 
Stine Frisk Fredslund, Helle Smidt Mogensen, Niels Morling 
Template preparation of AmpliSeq™ libraries using the Ion Chef™
Establishment of Italian national DNA database and the central laboratory: Some aspects  R. Biondo, F. De Stefano  Forensic Science International: Genetics.
Repeated extraction of DNA from FTA cards
A custom software solution for forensic mtDNA analysis of MiSeq data
R. Alghafri, S. Alhammadi, K. Amiri 
Population data for SE33 locus in United Arab Emirates Arab population
Christel H. Petersen, Benjamin B. Hjort, Torben Tvedebrink, Lukasz J
Development of a SNP-STRs multiplex for forensic identification
Automated extraction of DNA from clothing
Combining DNA evidence for greater match information
Andréa M. Oliveira, Leonor Gusmão, Peter M. Schneider, Iva Gomes 
Sequences of microvariant/“off-ladder” STR alleles
Oskar Hansson, Peter Gill 
J. Hedman, L. Albinsson, L. Norén, R. Ansell 
A. Verzeletti, V. Cortellini, S. Cisana, S. Pretto, N. Cerri, F
Petra Zenke, Balázs Egyed, Zsolt Pádár, Gábor Kovács 
Genetic structure of Moroccan population using 15 STRs of NGM kit
Automated addition of Chelex solution to tubes containing trace items
Efficient DNA extraction from hair shafts
A comparison of AmpFlSTR Identifiler™ Kit versus AmpFlSTR Identifiler Plus™ Kit in challenging bone samples by using normal and increased PCR cycle number 
Is it always possible to avoid exhumation in particular defective paternity cases by increasing autosomal STRs number?  E. Carnevali, L. Caenazzo, N.
Distribution of Y chromosome haplogroup Q in Greenlanders
Analysis of forensic samples in Banco Nacional de Datos Genéticos
Introducing a latent variable approach for finding populations in a forensic DNA database  Maarten Kruijver  Forensic Science International: Genetics.
Determination of siblings: A special case report from Halle
On the exact distribution of the numbers of alleles in DNA mixtures
Developmental validation of a fully automated genotyping assay capable of detecting length and sequence variation in the CODIS STR loci  David D. Duncan,
Testing the behavior of GlobalFiler® PCR amplification kit with degraded and/or inhibited biological samples  V. Bogas, M. Carvalho, F. Corte-Real, M.J.
M. Hara, T. Masuda, A. Takada, T. Miyazaki, H. Suzuki, A. Kido, K
Semen detection: A retrospective overview from 2010
Application of less primer method to commercial kits
Linda Albinsson, Johannes Hedman, Ricky Ansell 
Eye colour and SNPs in Danes
Kpop: A Python package for population genetics analysis
Detection of GSTM1, GSTT1 and the Ile105Val GSTP1 gene variants
A method to identify a large number of mammalian species in the UK from trace samples and mixtures without the use of sequencing  Shanan S. Tobe, Adrian.
Monique Wesselink, Irene Kuiper 
Effects of the most common methods for the enhancement of latent fingerprints on DNA extraction from forensic samples  S. Gino, M. Omedei  Forensic Science.
M. Lurdes Pontes, M. Fátima Pinheiro 
Purification and concentration of PCR products leads to increased signal intensities with fewer allelic drop-outs and artifacts  L.M.I. Pedersen, M. Stangegaard,
Development of a 24-plex Y chromosomal STR loci typing system
Statistical aspects of familial searching
Andreas O. Tillmar, Helena Nilsson, Gunilla Holmlund 
Forensic nomenclature for short tandem repeats updated for sequencing
Analysis strategies to establish vWF intron 40 haplotypes
First application of the Investigator DIPplex indels typing kit for the analysis of ancient DNA samples  C. Hollard, F. Mendisco, C. Keyser, E. Crubézy,
Discrepancies between forensic DNA databases
J.J. Guo, H.D. Liao, X.L. Fu, L. Zha, J.S. Liu, J.F. Cai 
A.M. Ölçen, G. Filoğlu, H. Altunçul, S. Erdem, Ö. Bülbül 
Sequences of microvariant/“off-ladder” STR alleles
Presentation transcript:

Modelling noise in second generation sequencing forensic genetics STR data using a one-inflated (zero-truncated) negative binomial model  Søren B. Vilsen, Torben Tvedebrink, Helle Smidt Mogensen, Niels Morling  Forensic Science International: Genetics Supplement Series  Volume 5, Pages e416-e417 (December 2015) DOI: 10.1016/j.fsigss.2015.09.165 Copyright © 2015 Elsevier Ireland Ltd Terms and Conditions

Fig. 1 All unique reads of D16 (2ng sample). The five vertical lines show thresholds created using the ML, WF and two naïve methods. Forensic Science International: Genetics Supplement Series 2015 5, e416-e417DOI: (10.1016/j.fsigss.2015.09.165) Copyright © 2015 Elsevier Ireland Ltd Terms and Conditions