with the Ensembl Genome Browser

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Presentation transcript:

with the Ensembl Genome Browser Genome Browsing with the Ensembl Genome Browser http://www.ensembl.org/

Genome Browsers UCSC NCBI Ensembl http://genome.ucsc.edu/ http://www.ensembl.org/

Ensembl Genome Browser

Human Genome

MapView

ContigView - Overview

CytoView

ContigView - Detailed view

GeneView

GeneSpliceView

GeneSNPView

GeneView → TransView/ProtView

TransView

TransView (continued)

ProtView

ProtView - Sequence

ProtView → DomainView/FamilyView

DomainView

FamilyView

ContigView → FeatureView

FeatureView

MapView → SyntenyView

SyntenyView

ContigView → MultiContigView

MultiContigView - Overview

MultiContigView – Detailed view

Other Ensembl Features Blast searching Data mining (Biomart) Select data based on advanced criteria (e.g. genome location, protein domains, functional annotation, expression, orthology, etc.) Retrieve in various formats (HTML, Excel, text) Data downloading (FTP)