Alignment of distal NOS2 promoters from cattle, human, and sheep, and the Bov-A2 element. Alignment of distal NOS2 promoters from cattle, human, and sheep,

Slides:



Advertisements
Similar presentations
A Computational Analysis of the H Region of Mouse Olfactory Receptor Locus 28 Deanna Mendez SoCalBSI August 2004.
Advertisements

COURSE OF BIOINFORMATICS Exam_31/01/2014 A.
Imprinting-Mutation Mechanisms in Prader-Willi Syndrome
RT-PCR and qRT-PCR analyses of the hasA upstream region.
by Kumar Kotlo, Douglas E. Hughes, Victoria L. M
Hair Keratin Associated Proteins: Characterization of a Second High Sulfur KAP Gene Domain on Human Chromosome 211  Michael A. Rogers, Hermelita Winter,
HIF1 binds and stimulates the VEGFA promoter in normoxia.
Hair Keratin Associated Proteins: Characterization of a Second High Sulfur KAP Gene Domain on Human Chromosome 211  Michael A. Rogers, Hermelita Winter,
Volume 10, Issue 7, Pages (July 2017)
Dual-Luciferase Activation Assay with Potential Targets of ZmbZIP22.
Volume 18, Issue 9, Pages (February 2017)
Sequencing of t(2;7) Translocations Reveals a Consistent Breakpoint Linking CDK6 to the IGK Locus in Indolent B-Cell Neoplasia  Edward P.K. Parker, Reiner.
Daniel J. Bernard, Ph. D. , Jérôme Fortin, B. Sc. , Ying Wang, B. Sc
High prevalence of ST-78 infection-associated vancomycin-resistant Enterococcus faecium from hospitals in Asunción, Paraguay  M.A. Khan, J.B. Northwood,
Formation of Chromosomal Domains by Loop Extrusion
Zhifei Luo, Suhn Kyong Rhie, Fides D. Lay, Peggy J. Farnham 
Systems Biophysics of Gene Expression
Control of splicing. Control of splicing. Cis acting elements, such as exon splicing enhancer sequences (ESE), exon splicing silencers (ESS), intron splicing.
SgRNAs targeting the 5′ coding region of β-catenin are ineffective due to an alternative translation initiation site in exon 3. sgRNAs targeting the 5′
Structure of the 5′ Portion of the Human Plakoglobin Gene
The Antisense Transcriptomes of Human Cells
Volume 18, Issue 2, Pages (April 2005)
Volume 11, Issue 5, Pages (May 2003)
Andrew R. Bassett, Charlotte Tibbit, Chris P. Ponting, Ji-Long Liu 
Volume 25, Issue 5, Pages (November 2006)
Comparison of the variable regions of (A) pHNZY32, pHNZY118, and pHNAH24; (B) pHNMCC14; (C) pHNFKU92; (D) pE80; (E) pECB11; (F) p42-2; and (G) pSLK172-2.
Sonal S. Joshi, Victoria H. Meller  Current Biology 
E. Wang, Y. -C. Ding, P. Flodman, J. R. Kidd, K. K. Kidd, D. L
Characterization of oprD promoter elements.
Unlinking an lncRNA from Its Associated cis Element
Michael A. Rogers, Hermelita Winter, Christian Wolf, Jürgen Schweizer 
Protein sequence alignment of the NS3 helicase–encoding region of 63 flaviviruses demonstrates conservation of a KIR2DS2-binding peptide. Protein sequence.
Volume 21, Issue 6, Pages e6 (December 2017)
The mutations apblot and apXa affect the ap wing enhancer region.
Alternative Splicing: New Insights from Global Analyses
Volume 7, Issue 2, Pages (August 2010)
Schematic drawing of alternatively-spliced GFP reporter gene.
Alignment of wild-type and mosaic Neisseria gonorrhoeae mtr promoters with N. lactamica and N. meningitidis references. Alignment of wild-type and mosaic.
Alignment of putative chicken HB-EGF to mammalian HB-EGF proteins and the domains of HB-EGF. Alignment of putative chicken HB-EGF to mammalian HB-EGF proteins.
dsRBDs 3 and 4 of hStau1 are sufficient for ARF1 SBS binding.
STAT4 facilitates a permissive epigenetic landscape (H3K4me3) in activated NK cells. STAT4 facilitates a permissive epigenetic landscape (H3K4me3) in activated.
Fig. 7. Motion adaptation increases time-dependent response modulations (TDRM) relatively to the average cell response.TDRM normalized to the value obtained.
Protein sequence alignment of the NS3 helicase–encoding region of 63 flaviviruses demonstrates conservation of a KIR2DS2-binding peptide. Protein sequence.
Mutation in pycr1a exon 3 disrupts predicted exonic splicing enhancers
dex-1 expression in the seam cells is regulated by DAF-16.
Fig. 1. Prediction of Foxn4 cis-regulatory elements and experimental design for functional verification.(A) Comparative sequence analysis between mouse.
The Bov-A2 element is conserved in the NOS2 gene of bovid species.
Structural Variations of the Kala4 Promoters in 21 Black Rice Varieties.The Kala4 promoters of 21 black rice varieties were classified into three types.
Andrew Peters, Ursula Storb  Immunity 
Alignment of Wt1 genomic regions reveals a highly conserved element upstream of zebrafish wt1a. Alignment of Wt1 genomic regions reveals a highly conserved.
Fig. 2 Reference-fixing experiment, results.
Regulation of Involucrin Gene Expression
The MEG3 promoter and enhancer interact with other putative enhancers within the DLK1-MEG3–imprinted region. The MEG3 promoter and enhancer interact with.
ERF12 Binds Directly to the DRE/CRT Element in the DOG1 Promoter.
Map of the HindIII K, L, and J fragments of murine CMV (K181+ strain).
Transcriptional control: Imprinting insulation
Gene regulatory regions of the insect/crustacean egr-B homologs.
Proximal E-box sequence in Bdnf promoter 4 functions as a transcriptional suppressor. Proximal E-box sequence in Bdnf promoter 4 functions as a transcriptional.
The ITGAL promoter is methylated in fibroblasts but not T cells
Methylation of cytosine and consequences of deamination of methyl-C
Chromosomal maps of three M
A RING to Rule Them All: RING1 as Silencer and Activator
Georgina Berrozpe, Gene O. Bryant, Katherine Warpinski, Mark Ptashne 
Integrated analysis of gene expression and copy number alterations.
Mutant TERT promoter displays active histone marks and distinct long-range interactions: A, cell lines that were used in the study with their origin and.
Multiple alignment of type I and III IFNs from Xenopus, chicken, and human. Multiple alignment of type I and III IFNs from Xenopus, chicken, and human.
Fig. 4 Matrix for intersections of differentially expressed transcripts between RNAiAFL transgenic and null kernels. Matrix for intersections of differentially.
Fig. 5 Enhancers and super-enhancers identified in various brain cell populations. Enhancers and super-enhancers identified in various brain cell populations.
Scheme showing the secondary structure assignment of human PAH sequence (SWISS-PROT P00439). Scheme showing the secondary structure assignment of human.
Fig. 3 Genome editing of the MSTN gene.
Presentation transcript:

Alignment of distal NOS2 promoters from cattle, human, and sheep, and the Bov-A2 element. Alignment of distal NOS2 promoters from cattle, human, and sheep, and the Bov-A2 element. NOS2 promoter sequences were obtained from Ensembl. (A and B) show pairwise dot-matrix alignment of 25 kb sequences upstream of NOS2 transcription start site from (A) cattle (y-axis) versus human (x-axis), and (B) sheep (y-axis) versus cattle (x-axis). The arrow in (A) indicates the relative location of the mouse Nos2 enhancer. In (B), small insertions showing misalignment are indicated by arrows. (C and D) show the alignment of the Bov-A2 element with the cattle (C) and sheep (D) 25 kb NOS2 promoter regions. Arrows indicate regions occupied by partial or complete Bov-A2 elements. Rachel Young et al. ImmunoHorizons 2018;2:27-37 Copyright © 2018 The Authors