Deciphering NAD-Dependent Deacetylases

Slides:



Advertisements
Similar presentations
Volume 11, Issue 8, Pages (August 2003)
Advertisements

Structural Basis of Substrate Methylation and Inhibition of SMYD2
Structure of the Rho Family GTP-Binding Protein Cdc42 in Complex with the Multifunctional Regulator RhoGDI  Gregory R. Hoffman, Nicolas Nassar, Richard.
Invariant Chain Structure and MHC Class II Function
Intrinsic Cellular Defenses against Human Immunodeficiency Viruses
by Andrew D. Ferguson, Eckhard Hofmann, James W
Volume 105, Issue 4, Pages (May 2001)
Volume 8, Issue 3, Pages (March 2000)
Sebastian Meyer, Raimund Dutzler  Structure 
The Crystal Structure of a Laminin G–like Module Reveals the Molecular Basis of α- Dystroglycan Binding to Laminins, Perlecan, and Agrin  Erhard Hohenester,
Fulvia Bono, Judith Ebert, Esben Lorentzen, Elena Conti  Cell 
Structure of an LDLR-RAP Complex Reveals a General Mode for Ligand Recognition by Lipoprotein Receptors  Carl Fisher, Natalia Beglova, Stephen C. Blacklow 
Volume 9, Issue 5, Pages (May 2001)
Volume 3, Issue 9, Pages (September 1995)
Volume 12, Issue 7, Pages (July 2004)
Crystal structure of human mitochondrial NAD(P)+-dependent malic enzyme: a new class of oxidative decarboxylases  Yingwu Xu, Girija Bhargava, Hao Wu,
Structure of the Replicating Complex of a Pol α Family DNA Polymerase
Volume 108, Issue 6, Pages (March 2002)
Volume 11, Issue 8, Pages (August 2003)
Volume 10, Issue 12, Pages (December 2002)
Structure of the Angiopoietin-2 Receptor Binding Domain and Identification of Surfaces Involved in Tie2 Recognition  William A. Barton, Dorothea Tzvetkova,
Sirtuins Caught in the Act
Xiao Tao, Zhiru Yang, Liang Tong  Structure 
Volume 24, Issue 1, Pages (October 2006)
Structure and RNA Interactions of the N-Terminal RRM Domains of PTB
Volume 16, Issue 4, Pages (November 2004)
Volume 94, Issue 4, Pages (August 1998)
Kevin G. Hoff, José L. Avalos, Kristin Sens, Cynthia Wolberger 
Volume 31, Issue 2, Pages (July 2008)
A Shared Surface of TBP Directs RNA Polymerase II and III Transcription via Association with Different TFIIB Family Members  Xuemei Zhao, Laura Schramm,
Crystal Structures of RNase H Bound to an RNA/DNA Hybrid: Substrate Specificity and Metal-Dependent Catalysis  Marcin Nowotny, Sergei A. Gaidamakov, Robert.
Structure of the Yeast Hst2 Protein Deacetylase in Ternary Complex with 2′-O-Acetyl ADP Ribose and Histone Peptide  Kehao Zhao, Xiaomei Chai, Ronen Marmorstein 
Structural Basis for Substrate Selection by T7 RNA Polymerase
Volume 5, Issue 7, Pages (July 1997)
Structural Elements of an Orphan Nuclear Receptor–DNA Complex
Crystal Structure of a SIR2 Homolog–NAD Complex
Qian Steven Xu, Rebecca B. Kucera, Richard J. Roberts, Hwai-Chen Guo 
Volume 33, Issue 2, Pages (January 2009)
Volume 10, Issue 4, Pages (April 2002)
Volume 3, Issue 5, Pages (May 1999)
Volume 6, Issue 6, Pages (December 2000)
Volume 8, Issue 5, Pages (November 2001)
A Different Look for AB5 Toxins
Volume 91, Issue 7, Pages (December 1997)
Volume 6, Issue 1, Pages (July 2000)
The Nucleosome Cell Volume 116, Issue 2, Pages (January 2004)
Structural Basis for FGF Receptor Dimerization and Activation
Volume 15, Issue 3, Pages (March 2007)
Volume 29, Issue 6, Pages (March 2008)
Structure of the Rho Family GTP-Binding Protein Cdc42 in Complex with the Multifunctional Regulator RhoGDI  Gregory R. Hoffman, Nicolas Nassar, Richard.
Crystal Structure of 4-Amino-5-Hydroxymethyl-2- Methylpyrimidine Phosphate Kinase from Salmonella typhimurium at 2.3 Å Resolution  Gong Cheng, Eric M.
Volume 34, Issue 3, Pages (May 2009)
Structural Insight into AMPK Regulation: ADP Comes into Play
Structure of the Staphylococcus aureus AgrA LytTR Domain Bound to DNA Reveals a Beta Fold with an Unusual Mode of Binding  David J. Sidote, Christopher.
Robert S. Magin, Glen P. Liszczak, Ronen Marmorstein  Structure 
Spliceosomal snRNAs Cell
Structure of STAT6CF and N4 site DNA complex.
Crystal Structures of RNase H Bound to an RNA/DNA Hybrid: Substrate Specificity and Metal-Dependent Catalysis  Marcin Nowotny, Sergei A. Gaidamakov, Robert.
The Structure of JNK3 in Complex with Small Molecule Inhibitors
The Crystal Structure of a Laminin G–like Module Reveals the Molecular Basis of α- Dystroglycan Binding to Laminins, Perlecan, and Agrin  Erhard Hohenester,
Structure of the Histone Acetyltransferase Hat1
Structural Insights into the Origins of DNA Polymerase Fidelity
Bacteriophage DNA Packaging
The Structure of T. aquaticus DNA Polymerase III Is Distinct from Eukaryotic Replicative DNA Polymerases  Scott Bailey, Richard A. Wing, Thomas A. Steitz 
Volume 7, Issue 2, Pages R19-R23 (February 1999)
Joshua J. Sims, Robert E. Cohen  Molecular Cell 
Robert S. Magin, Glen P. Liszczak, Ronen Marmorstein  Structure 
Volume 95, Issue 2, Pages (October 1998)
Volume 14, Issue 8, Pages (August 2006)
Volume 25, Issue 1, Pages (January 2017)
Presentation transcript:

Deciphering NAD-Dependent Deacetylases Robert N. Dutnall, Lorraine Pillus  Cell  Volume 105, Issue 2, Pages 161-164 (April 2001) DOI: 10.1016/S0092-8674(01)00305-1

Figure 1 The Conserved Core Domain in the Sir2p Family (a) Schematic representation of sequences of selected members of the Sir2p family of NAD-dependent deacetylases. Sequences shown illustrate the diversity in the lengths of N- and C-terminal regions outside of the conserved core domain. (b) Enlargement of Sir2-Af1 illustrating the contributions of sequence regions to the multidomain structure of the core domain. Numbers within the boxes represent the approximate length of the respective regions. Triangles indicate the approximate locations in which additional residues are inserted in other members of the Sir2p family (discussed in the text) Cell 2001 105, 161-164DOI: (10.1016/S0092-8674(01)00305-1)

Figure 2 Overview of the Sir2-Af1/NAD Complex Schematic representation of the Sir2-Af1/NAD complex structure. The zinc ion is shown as a gray sphere along with the locations of the coordinating cysteine residues. NAD is shown in a ball-and-stick representation; red, nicotinamide ring (inferred position); blue, adenine ring; purple, ribose and phosphate moieties. The approximate locations of sites A, B, and C of the NAD binding site are indicated. An open circle indicates the entrance to the channel through which an acetyl-lysine side chain could enter site B. The location of the substrate binding cleft proposed by Min et al. is indicated along with a possible alternative binding site in a shallow groove of the Rossmann fold domain (dashed line). Triangles indicate positions of sequence insertions (see Figure 1b) Cell 2001 105, 161-164DOI: (10.1016/S0092-8674(01)00305-1)