Config → Redox couples… Decouple redox pairs for electron donating and accepting half reactions.

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Presentation transcript:

Config → Redox couples… Decouple redox pairs for electron donating and accepting half reactions

Set the initial fluid composition on the Basis pane. Initial fluid contains acetate and is in contact with O2 and CO2 in the atmosphere Set the simulation’s duration

Set up kinetic rate laws for two microbial strains on the Reactants pane. add → Kinetic → Microbial reaction add → Kinetic → Microbial reaction In this example, we also set buffers and supply additional substrate to the system

Click to expand and supply kinetic parameters for each microbe Buffer values Click to expand and supply kinetic parameters for each microbe Supply additional substrate

Supply kinetic parameters Identify each microbial population with a label and reaction. Microbes can compete for common substrates or catalyze different reactions. In this example, two different strains, (one fast, the other efficient) growing in a chemostat catalyze the same reaction. They differ in their kinetic and growth parameters.

The rapidly metabolizing strain grows fastest initially, but with time is replaced by the more efficient strain.