On the Thermodynamic Efficiency of Ca2+-ATPase Molecular Machines

Slides:



Advertisements
Similar presentations
Tethered Polymer-Supported Planar Lipid Bilayers for Reconstitution of Integral Membrane Proteins: Silane-Polyethyleneglycol-Lipid as a Cushion and Covalent.
Advertisements

How Do Thermophilic Proteins and Proteomes Withstand High Temperature? Lucas Sawle, Kingshuk Ghosh Biophysical Journal Volume 101, Issue 1, Pages
On the Thermodynamic Efficiency of Ca2+-ATPase Molecular Machines Anders Lervik, Fernando Bresme, Signe Kjelstrup, J. Miguel Rubí Biophysical Journal Volume.
Tryptophan-Lipid Interactions in Membrane Protein Folding Probed by Ultraviolet Resonance Raman and Fluorescence Spectroscopy Katheryn M. Sanchez, Guipeun.
Molecular Model of a Cell Plasma Membrane With an Asymmetric Multicomponent Composition: Water Permeation and Ion Effects Robert Vácha, Max L. Berkowitz,
A Multiscale Red Blood Cell Model with Accurate Mechanics, Rheology, and Dynamics Dmitry A. Fedosov, Bruce Caswell, George Em Karniadakis Biophysical Journal.
X-Ray Absorption Spectroscopy of Dinuclear Metallohydrolases David L. Tierney, Gerhard Schenk Biophysical Journal Volume 107, Issue 6, Pages
Lever-Arm Mechanics of Processive Myosins Yujie Sun, Yale E. Goldman Biophysical Journal Volume 101, Issue 1, Pages 1-11 (July 2011) DOI: /j.bpj
Nonlinear Poisson Equation for Heterogeneous Media Langhua Hu, Guo-Wei Wei Biophysical Journal Volume 103, Issue 4, Pages (August 2012) DOI: /j.bpj
Volume 111, Issue 7, Pages (October 2016)
Multi-Image Colocalization and Its Statistical Significance
Kinetic Hysteresis in Collagen Folding
Influence of Chain Length and Unsaturation on Sphingomyelin Bilayers
Volume 99, Issue 6, Pages (September 2010)
Rosa Bartucci, Rita Guzzi, Mikael Esmann, Derek Marsh 
Composition Fluctuations in Lipid Bilayers
Equation of State for Phospholipid Self-Assembly
Marc Jendrny, Thijs J. Aartsma, Jürgen Köhler  Biophysical Journal 
Volume 104, Issue 1, Pages (January 2013)
He Meng, Johan Bosman, Thijn van der Heijden, John van Noort 
Volume 88, Issue 1, Pages (January 2005)
An Equilibrium Model for the Combined Effect of Macromolecular Crowding and Surface Adsorption on the Formation of Linear Protein Fibrils  Travis Hoppe,
Prediction of Thylakoid Lipid Binding Sites on Photosystem II
Volume 113, Issue 9, Pages (November 2017)
Volume 96, Issue 2, Pages (January 2009)
Volume 99, Issue 10, Pages (November 2010)
Qiaochu Li, Stephen J. King, Ajay Gopinathan, Jing Xu 
Volume 112, Issue 7, Pages (April 2017)
Coarse-Grained Molecular Dynamics Simulations of Phase Transitions in Mixed Lipid Systems Containing LPA, DOPA, and DOPE Lipids  Eric R. May, Dmitry I.
Christian Rickert, Catherine Proenza  Biophysical Journal 
Volume 114, Issue 2, Pages (January 2018)
Gerald Offer, K.W. Ranatunga  Biophysical Journal 
Modulating Vesicle Adhesion by Electric Fields
Dmitry A. Fedosov, Bruce Caswell, George Em Karniadakis 
V.M. Burlakov, R. Taylor, J. Koerner, N. Emptage  Biophysical Journal 
Volume 103, Issue 2, Pages (July 2012)
Confinement-Dependent Friction in Peptide Bundles
Volume 99, Issue 1, Pages (July 2010)
Volume 113, Issue 6, Pages (September 2017)
Jonathan P. Litz, Niket Thakkar, Thomas Portet, Sarah L. Keller 
Kinetic Hysteresis in Collagen Folding
Comparative Molecular Dynamics Simulation Studies of Protegrin-1 Monomer and Dimer in Two Different Lipid Bilayers  Huan Rui, Jinhyuk Lee, Wonpil Im 
Volume 102, Issue 9, Pages (May 2012)
Firdaus Samsudin, Alister Boags, Thomas J. Piggot, Syma Khalid 
Volume 99, Issue 2, Pages (July 2010)
Volume 85, Issue 4, Pages (October 2003)
Ronen Zangi, Marcel L. de Vocht, George T. Robillard, Alan E. Mark 
Chetan Poojari, Dequan Xiao, Victor S. Batista, Birgit Strodel 
Phase Behavior of DNA in the Presence of DNA-Binding Proteins
Acyl Chain Length and Saturation Modulate Interleaflet Coupling in Asymmetric Bilayers: Effects on Dynamics and Structural Order  Salvatore Chiantia,
Volume 111, Issue 1, Pages (July 2016)
Volume 98, Issue 9, Pages (May 2010)
On the Role of Acylation of Transmembrane Proteins
Ion-Induced Defect Permeation of Lipid Membranes
Robust Driving Forces for Transmembrane Helix Packing
Philip J. Robinson, Teresa J.T. Pinheiro  Biophysical Journal 
Effect of Grafting on Aggregation of Intrinsically Disordered Proteins
Multi-Image Colocalization and Its Statistical Significance
Volume 99, Issue 11, Pages (December 2010)
Volume 104, Issue 2, Pages (January 2013)
Volume 103, Issue 11, Pages (December 2012)
Modeling Endoplasmic Reticulum Network Maintenance in a Plant Cell
Volume 99, Issue 11, Pages (December 2010)
Shayantani Mukherjee, Sean M. Law, Michael Feig  Biophysical Journal 
Small-Angle X-Ray Scattering of the Cholesterol Incorporation into Human ApoA1- POPC Discoidal Particles  Søren Roi Midtgaard, Martin Cramer Pedersen,
Volume 106, Issue 9, Pages (May 2014)
Lipid Librations at the Interface with the Na,K-ATPase
Volume 99, Issue 1, Pages (July 2010)
Distribution of Halothane in a Dipalmitoylphosphatidylcholine Bilayer from Molecular Dynamics Calculations  Laure Koubi, Mounir Tarek, Michael L. Klein,
Volume 98, Issue 3, Pages (February 2010)
Presentation transcript:

On the Thermodynamic Efficiency of Ca2+-ATPase Molecular Machines Anders Lervik, Fernando Bresme, Signe Kjelstrup, J. Miguel Rubí  Biophysical Journal  Volume 103, Issue 6, Pages 1218-1226 (September 2012) DOI: 10.1016/j.bpj.2012.07.057 Copyright © 2012 Biophysical Society Terms and Conditions

Figure 1 Sketch of the Ca2+-ATPase protein embedded in a vesicle/phospholipid membrane. The Ca2+-ATPase is drawn in blue and the bilayer in gray. (Upper) The vesicle shown with only one protein in exaggerated size for clarity. (Lower) Enlargement of dashed-box area in upper image, where the arrows illustrate the direction in which the ions are transported under the normal operation of the pump. The positive direction for transport is from the external phase (cytosol/out) to the internal phase (lumen/in). Biophysical Journal 2012 103, 1218-1226DOI: (10.1016/j.bpj.2012.07.057) Copyright © 2012 Biophysical Society Terms and Conditions

Figure 2 Entropy production (circles) of the system as a function of acyl chain length, calculated using Eq. 8 and the experimental data of Caffrey and Feigenson (2), as listed in Table 2. The uncertainties have been estimated as explained in Appendix A. The average values (squares) are calculated for each chain length and are connected with a dashed line. Horizontal lines represent estimates of the entropy production for the ATPases listed in Table 1, from top to bottom: white muscle heavy fraction, white muscle, brown adipose tissue, red muscle, and blood platelets. We note that the experiments by Caffrey and Feigenson (2) were carried out at 25°C, whereas the experiments listed in Table 1 were carried out at 35°C. Biophysical Journal 2012 103, 1218-1226DOI: (10.1016/j.bpj.2012.07.057) Copyright © 2012 Biophysical Society Terms and Conditions

Figure 3 Efficiency (circles) of the system as a function of acyl chain length. The efficiencies are calculated using Eq. 10 and the experimental data of Caffrey and Feigenson (2) and are listed in Table 2. The uncertainties have been estimated as explained in Appendix A. The average values (squares) are calculated for each chain length and are connected with a dashed line. Biophysical Journal 2012 103, 1218-1226DOI: (10.1016/j.bpj.2012.07.057) Copyright © 2012 Biophysical Society Terms and Conditions