Figure S4 Chr1 : CNAG_00378 CNAG_07950* CNAG_07358* CNAG_00383

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Figure S4 Chr1 : 968475..1010151 CNAG_00378 CNAG_07950* CNAG_07358* CNAG_00383 * share sequence similarities with transposases Chr2 : 831923..895839 CNAG_03796 CNAG_03797* CNAG_03798* CNAG_03805 * very poorly transcribed in all conditions tested. share sequence similarities with transposases Chr3 : 1368078..1411498 CNAG_02561 CNAG_07972 CNAG_06879 exon miscRNA

Chr4: 706259..754424 CNAG_05202 CNAG_05212* CNAG_05215 CNAG_07819* * share sequence similarities with transposases Chr5: 1555039..1581098 CNAG_00960 CNAG_07447* CNAG_00941 *CNAG_07447 is poorly expressed in all tested conditions and share sequence similarities with transposases CNAG_02254 CNAG_07643* CNAG_02253* CNAG_07644* CNAG_02241 Chr6: 777396..822756 * CNAG_07643, 02253 and 07747 are very poorly transcribed in all conditions tested. Share no homology with any protein exon miscRNA

CNAG_06699 CNAG_05671 CNAG_05670* * CNAG_05670 is very poorly transcribed in all conditions tested Low similarities with transposases Chr7: 523624..573113 CNAG_03251 CNAG_03252* CNAG_03258 Chr8: 449948..507676 * CNAG_03252 is very poorly expressed in all conditions tested. No homology with any known protein Chr9: 79939..845219 CNAG_04417 CNAG_7769 exon miscRNA

Chr10: 197074..232221 CNAG_04857 CNAG_04855 Chr11: 866489..934650 CNAG_01780 CNAG_01781* CNAG_01787* CNAG_01788 *CNAG_01781 and CNAG_01787 show some similarities with transposable elements. Chr12: 136445..171981 CNAG_06036 CNAG_06048 exon miscRNA

Chr14: 438184..479950 Chr13: 575725..634634 exon miscRNA CNAG_06475 *Poorly expressed in all tested conditions. CNAG_5487 and CNAG_8026 share low sequence similarities with transposases. CNAG_07882 share non homology with any known protein. exon miscRNA