A Common Haplotype in the G-Protein–Coupled Receptor Gene GPR74 Is Associated with Leanness and Increased Lipolysis  Ingrid Dahlman, Andrea Dicker, Hong.

Slides:



Advertisements
Similar presentations
Gene Preference in Maple Syrup Urine Disease Mary M. Nellis, Dean J. Danner The American Journal of Human Genetics Volume 68, Issue 1, Pages (January.
Advertisements

Design and Multiseries Validation of a Web-Based Gene Expression Assay for Predicting Breast Cancer Recurrence and Patient Survival Ryan K. Van Laar The.
A Haplotype at STAT2 Introgressed from Neanderthals and Serves as a Candidate of Positive Selection in Papua New Guinea  Fernando L. Mendez, Joseph C.
The Trimmed-Haplotype Test for Linkage Disequilibrium
Extensive Linkage Disequilibrium in Small Human Populations in Eurasia
A Cholesterol-Lowering Gene Maps to Chromosome 13q
Identification of a Major Susceptibility Locus for Restless Legs Syndrome on Chromosome 12q  Alex Desautels, Gustavo Turecki, Jacques Montplaisir, Adolfo.
Transmission/Disequilibrium Tests for Extended Marker Haplotypes
Association of functional genetic variants of CTLA4 with reduced serum CTLA4 protein levels and increased risk of idiopathic recurrent miscarriages  Maneesh.
Association of insulin receptor genetic variants with polycystic ovary syndrome in a population of women from Central Europe  Felicia A. Hanzu, M.D.,
CYP3A Variation and the Evolution of Salt-Sensitivity Variants
Strong Evidence That KIAA0319 on Chromosome 6p Is a Susceptibility Gene for Developmental Dyslexia  Natalie Cope, Denise Harold, Gary Hill, Valentina.
Zoran Brkanac, Jannine D. Cody, Robin J. Leach, Barbara R. DuPont 
Total-Genome Analysis of BRCA1/2-Related Invasive Carcinomas of the Breast Identifies Tumor Stroma as Potential Landscaper for Neoplastic Initiation 
Piyawan Kittiskulnam, MD, Glenn M. Chertow, MD, MPH, George A
Qing Cheng, Cheng Cheng, Kristine R. Crews, Raul C
Linkage Disequilibrium Mapping of Schizophrenia Susceptibility to the CAPON Region of Chromosome 1q22  Linda M. Brzustowicz, Jaime Simone, Paria Mohseni,
Association of the −243 A→G polymorphism of the glutamate decarboxylase 2 gene with obesity in girls with premature pubarche  Selma Feldman Witchel, M.D.,
Effects of testosterone and estrogen treatment on lipolysis signaling pathways in subcutaneous adipose tissue of postmenopausal women  Hong Zang, M.D.,
Genetic association of acidic mammalian chitinase with atopic asthma and serum total IgE levels  Rajshekhar Chatterjee, MSc, Jyotsna Batra, PhD, Sudipta.
Caroline Durrant, Krina T. Zondervan, Lon R
Tamara Rogers, David Chandler, Dora Angelicheva, P. K
So Many Correlated Tests, So Little Time
Polymorphisms in the Low-Density Lipoprotein Receptor–Related Protein 5 (LRP5) Gene Are Associated with Variation in Vertebral Bone Mass, Vertebral Bone.
QTL Fine Mapping by Measuring and Testing for Hardy-Weinberg and Linkage Disequilibrium at a Series of Linked Marker Loci in Extreme Samples of Populations 
Haplotype-Sharing Analysis Implicates Chromosome 7q36 Harboring DPP6 in Familial Idiopathic Ventricular Fibrillation  Marielle Alders, Tamara T. Koopmann,
The Future of Association Studies: Gene-Based Analysis and Replication
A Flexible Bayesian Framework for Modeling Haplotype Association with Disease, Allowing for Dominance Effects of the Underlying Causative Variants  Andrew.
Towfique Raj, Manik Kuchroo, Joseph M
Duplication of the MECP2 Region Is a Frequent Cause of Severe Mental Retardation and Progressive Neurological Symptoms in Males  Hilde Van Esch, Marijke.
CYP3A Variation and the Evolution of Salt-Sensitivity Variants
Howard B. Yeon, Noralane M. Lindor, J.G. Seidman, Christine E. Seidman 
Genome-wide Association Scan Identifies a Prostaglandin-Endoperoxide Synthase 2 Variant Involved in Risk of Knee Osteoarthritis  Ana M. Valdes, John Loughlin,
Haplotypes at ATM Identify Coding-Sequence Variation and Indicate a Region of Extensive Linkage Disequilibrium  Penelope E. Bonnen, Michael D. Story,
Polymorphisms in the Tyrosine Kinase 2 and Interferon Regulatory Factor 5 Genes Are Associated with Systemic Lupus Erythematosus  Snaevar Sigurdsson,
Naturally Occurring Mutations of the Luteinizing-Hormone Receptor: Lessons Learned about Reproductive Physiology and G Protein–Coupled Receptors  Ana.
Christoph Lange, Nan M. Laird  The American Journal of Human Genetics 
Disrupted in Schizophrenia 1 (DISC1): Association with Schizophrenia, Schizoaffective Disorder, and Bipolar Disorder  Colin A. Hodgkinson, David Goldman,
Complex Signatures of Natural Selection at the Duffy Blood Group Locus
Koji Suzuki, Tania Bustos, Richard A. Spritz 
Erratum The American Journal of Human Genetics
Pritam Chanda, Aidong Zhang, Daniel Brazeau, Lara Sucheston, Jo L
Evidence for Variable Selective Pressures at MC1R
Volume 16, Issue 4, Pages (April 2015)
Linkage Analysis Identifies a Novel Locus for Restless Legs Syndrome on Chromosome 2q in a South Tyrolean Population Isolate  Irene Pichler, Fabio Marroni,
Evidence That the Penetrance of Mutations at the RP11 Locus Causing Dominant Retinitis Pigmentosa Is Influenced by a Gene Linked to the Homologous RP11.
Stephen Leslie, Peter Donnelly, Gil McVean 
A Genomewide Search Using an Original Pairwise Sampling Approach for Large Genealogies Identifies a New Locus for Total and Low-Density Lipoprotein Cholesterol.
Population Structure in Admixed Populations: Effect of Admixture Dynamics on the Pattern of Linkage Disequilibrium  C.L. Pfaff, E.J. Parra, C. Bonilla,
Benjamin A. Rybicki, José L. Walewski, Mary J
Extensive Linkage Disequilibrium in Small Human Populations in Eurasia
Haplotype Diversity across 100 Candidate Genes for Inflammation, Lipid Metabolism, and Blood Pressure Regulation in Two Populations  Dana C. Crawford,
Association of the Gene Encoding Wingless-Type Mammary Tumor Virus Integration- Site Family Member 5B (WNT5B) with Type 2 Diabetes  Akio Kanazawa, Syuuichi.
Identification of KCNJ15 as a Susceptibility Gene in Asian Patients with Type 2 Diabetes Mellitus  Koji Okamoto, Naoko Iwasaki, Chisa Nishimura, Kent.
Volume 77, Issue 5, Pages (March 2010)
Yoav Gilad, Carlos D. Bustamante, Doron Lancet, Svante Pääbo 
6-n-Propylthiouracil: A Genetic Marker for Taste, with Implications for Food Preference and Dietary Habits  Beverly J. Tepper  The American Journal of.
Rational Inferences about Departures from Hardy-Weinberg Equilibrium
Genetic Polymorphisms in the Polycomb Group Gene EZH2 and the Risk of Lung Cancer  Kyong-Ah Yoon, MD, Hye Jin Gil, MS, Jihye Han, MS, Jaehee Park, MS,
Single Nucleotide Polymorphisms of the Fibroblast Growth Factor Receptor 2 Gene in Patients with Chronic Venous Insufficiency with Leg Ulcer  N. Nagy,
Yu Zhang, Tianhua Niu, Jun S. Liu 
A Gene for an Autosomal Dominant Scleroatrophic Syndrome Predisposing to Skin Cancer (Huriez Syndrome) Maps to Chromosome 4q23  Young-Ae Lee, Howard P.
Dror Sharon, Michael A. Sandberg, Vivian W
Lactase Haplotype Diversity in the Old World
A Haplotype at STAT2 Introgressed from Neanderthals and Serves as a Candidate of Positive Selection in Papua New Guinea  Fernando L. Mendez, Joseph C.
A Locus for Autosomal Dominant Hereditary Spastic Ataxia, SAX1,Maps to Chromosome 12p13  I.A. Meijer, C.K. Hand, K.K. Grewal, M.G. Stefanelli, E.J. Ives,
Gonçalo R. Abecasis, Janis E. Wigginton 
Duplication of the MECP2 Region Is a Frequent Cause of Severe Mental Retardation and Progressive Neurological Symptoms in Males  Hilde Van Esch, Marijke.
Qing Cheng, Cheng Cheng, Kristine R. Crews, Raul C
E. Ekelund, A. Sääf, M. Tengvall-Linder, E. Melen, J. Link, J
Presentation transcript:

A Common Haplotype in the G-Protein–Coupled Receptor Gene GPR74 Is Associated with Leanness and Increased Lipolysis  Ingrid Dahlman, Andrea Dicker, Hong Jiao, Juha Kere, Lennart Blomqvist, Vanessa van Harmelen, Johan Hoffstedt, Knut Borch- Johnsen, Torben Jörgensen, Torben Hansen, Oluf Pedersen, Markku Laakso, Peter Arner  The American Journal of Human Genetics  Volume 80, Issue 6, Pages 1115-1124 (June 2007) DOI: 10.1086/518445 Copyright © 2007 The American Society of Human Genetics Terms and Conditions

Figure 1 Schematic presentation of ascertainment schemes for samples 1–3. The American Journal of Human Genetics 2007 80, 1115-1124DOI: (10.1086/518445) Copyright © 2007 The American Society of Human Genetics Terms and Conditions

Figure 2 GPR74 SNPs and haplotypes. Bold font indicates SNPs with a call rate >90% and a frequency >5% that were used for inferring the haplotypes. Allelic frequency of specific GPR74 haplotypes in obese case patients (n=611) and lean control subjects (n=402) in sample 1 analyzed with Haploview. Haplotype P = mean ± SD (lower value of range) of probabilities by which haplotypes have been assigned to individuals. P values were calculated by χ2 test for significance of the difference in haplotype frequency between cases and controls. An asterisk (*) indicates significant difference in ATAG haplotype frequency between cases and control s in joint analysis of samples 1 and 2; P=.0014. The American Journal of Human Genetics 2007 80, 1115-1124DOI: (10.1086/518445) Copyright © 2007 The American Society of Human Genetics Terms and Conditions

Figure 3 Linkage disequilibrium (D′) between GPR74 SNPs in sample 1, according to Haploview analysis The American Journal of Human Genetics 2007 80, 1115-1124DOI: (10.1086/518445) Copyright © 2007 The American Society of Human Genetics Terms and Conditions

Figure 4 Association between carriage of GPR74 ATAG haplotype and waist circumference in men (A) and women (B). The blackened bar represents subjects carrying the ATAG haplotype; the unblackened bar represents subjects not carrying ATAG. The frequencies of haplotypes were as follows: in men in samples 1 and 2, ATAG = 19 and non-ATAG = 327; in men in sample 4, ATAG = 276 and non-ATAG = 3,615; in women in sample 1, ATAG = 55 and non-ATAG = 667; in women in sample 2, ATAG = 78 and non-ATAG = 995; in women in sample 4, ATAG = 262 and non-ATAG = 3,550. Samples 1 and 2 were analyzed by the Mann-Whitney U test, and sample 4 was analyzed using ANCOVA, with age as covariate. The American Journal of Human Genetics 2007 80, 1115-1124DOI: (10.1086/518445) Copyright © 2007 The American Society of Human Genetics Terms and Conditions

Figure 5 A, Association between carriage of the ATAG haplotype and in vivo lipolysis measured as plasma glycerol corrected for body fat. The blackened bar represents the 124 subjects carrying ATAG; the unblackened bar represents the 1,771 subjects not carrying ATAG. B, Association between carriage of the ATAG haplotype and in vivo lipolysis measured as plasma free fatty acids corrected for body fat. The blackened bar represents the 100 subjects carrying ATAG; the unblackened bar represents the 1,494 subjects not carrying ATAG. C, Association between carriage of the ATAG haplotype and adipocyte lipolytic sensitivity (pD2) of different adrenergic agonists. The blackened bar represents the 14 subjects carrying ATAG; the unblackened bar represents the 136 subjects not carrying ATAG. Analyzed subjects came from samples 1 and 2. Groups were compared by ANCOVA, with age as covariate in panel A and with age and BMI as covariates in panel B. The American Journal of Human Genetics 2007 80, 1115-1124DOI: (10.1086/518445) Copyright © 2007 The American Society of Human Genetics Terms and Conditions

Figure 6 A, Effect on human preadipocytes differentiated into adipocytes of the GPR74 agonist NPFF on lipolysis measured as plasma glycerol (five experiments). The white bar represents controls, the blackened bar represents NPFF for 3 h, and the striped bar represents NPFF for 48 h. B, Effect of siRNA against GPR74 on expression of GPR74 mRNA (four experiments). C, Effect of siRNA against GPR74 on lipolysis. The white bar represents no oligo, the gray shaded bar represents scrambled oligo, and the blackened bar represents GPR74 siRNA. Groups were compared by ANOVA. The American Journal of Human Genetics 2007 80, 1115-1124DOI: (10.1086/518445) Copyright © 2007 The American Society of Human Genetics Terms and Conditions