Research Techniques Made Simple: Single-Cell RNA Sequencing and its Applications in Dermatology  Xiaojun Wu, Bin Yang, Imo Udo-Inyang, Suyun Ji, David.

Slides:



Advertisements
Similar presentations
Sarah K. Whitley, William T. Horne, Jay K. Kolls 
Advertisements

The Molecular Revolution in Cutaneous Biology: The Era of Global Transcriptional Analysis  Andrew Johnston, Mrinal K. Sarkar, Antonia Vrana, Lam C. Tsoi,
Research Techniques Made Simple: Identification and Characterization of Long Noncoding RNA in Dermatological Research  Dario Antonini, Maria Rosaria Mollo,
Amy Bowman, Mark A. Birch-Machin  Journal of Investigative Dermatology 
Tiago R. Matos, Menno A. de Rie, Marcel B.M. Teunissen 
Jack L. Arbiser, Michael Y. Bonner 
Jay-Hyun Jo, Elizabeth A. Kennedy, Heidi H. Kong 
Next-Generation Sequencing: Methodology and Application
Expanding Our Understanding of Human Skin Aging
Skin-Derived Vitamin D3 Protects against Basal Cell Carcinoma
SATB1 Is a Pivotal Epigenetic Biomarker in Cutaneous T-Cell Lymphomas
Enhanced Proteolytic Activities in Acral Peeling Skin Syndrome: A Role of Transglutaminase 5 in Epidermal Homeostasis  Georgios Pampalakis, Dimitra Kiritsi,
A Score with a VESted Interest in Vitiligo
Getting to the Core of the Dermal Papilla
Michael L. Frisoli, John E. Harris 
Epidermal Differentiation: Transgenic/Knockout Mouse Models Reveal Genes Involved in Stem Cell Fate Decisions and Commitment to Differentiation  Maranke.
Clinical Snippets Journal of Investigative Dermatology
Expression of Two Breast-Specific Molecules in the Lung
Estela Chen Gonzalez, Jean Suh McGee 
PXR: A New Player in Atopic Dermatitis
The Growing Burden of Invasive Melanoma: Projections of Incidence Rates and Numbers of New Cases in Six Susceptible Populations through 2031  David C.
Langerhans Cells Orchestrate TFH-Dependent Humoral Immunity
Cutaneous T-Cell Lymphoma: The Yin and Yang of Inflammation and Neoplasia  Xuesong Wu, Sam T. Hwang  Journal of Investigative Dermatology Symposium Proceedings 
Joanne E. Sordillo, Peter Kraft, Ann Chen Wu, Maryam M. Asgari 
Research Techniques Made Simple: Cost-Effectiveness Analysis
Scarring Alopecia and the PPAR-γ Connection
Modeling Atopic Dermatitis with Increasingly Complex Mouse Models
Review: Ligands for Receptor Tyrosine Kinases Expressed in the Skin as Environmental Factors for Melanocyte Development  Takahiro Kunisada  Journal of.
Global Patterns of Methylation in Sézary Syndrome Provide Insight into the Role of Epigenetics in Cutaneous T-Cell Lymphoma  Sean Whittaker  Journal of.
Alexander Egeberg, Gregor B. E. Jemec, Alexa B
Scott A. Elman, James H. Ware, Alice B. Gottlieb, Joseph F. Merola 
Embryonic Fate Mapping Uncovers the Critical Role of microRNAs in the Development of Epidermal γδ T Cells  Yi Yao, Queping Liu, Carly Martin, Congcong.
Research Techniques Made Simple: CAR T-Cell Therapy
Tamar Nijsten  Journal of Investigative Dermatology 
The Molecular Revolution in Cutaneous Biology: The Era of Global Transcriptional Analysis  Andrew Johnston, Mrinal K. Sarkar, Antonia Vrana, Lam C. Tsoi,
Jean Cadet, Thierry Douki  Journal of Investigative Dermatology 
Single-Cell Transcriptomic Analysis of Tumor Heterogeneity
Journal of Investigative Dermatology
Cancer Stem Cells in Squamous Cell Carcinoma
IL-17 Takes Center Stage in Dermatophytosis
Clinical Snippets Journal of Investigative Dermatology
Sigrun A.J. Schmidt, Serigne Lo, Loes M. Hollestein 
Research Techniques Made Simple: Itch Measurement in Clinical Trials
Journal of Investigative Dermatology
Journal of Investigative Dermatology 
Research Techniques Made Simple: Bioinformatics for Genome-Scale Biology  Amy C. Foulkes, David S. Watson, Christopher E.M. Griffiths, Richard B. Warren,
David Quigley  Journal of Investigative Dermatology 
CXCR4 in Epidermal Keratinocytes: Crosstalk within the Skin
Michael C. Velarde  Journal of Investigative Dermatology 
Society for Investigative Dermatology 2010 Meeting Minutes
Journal of Investigative Dermatology
Multiple Epidermal Connexins are Expressed in Different Keratinocyte Subpopulations Including Connexin 31  Wei-Li Di, Elizabeth L. Rugg, Irene M. Leigh,
Fig. 1. iS-CellR pipeline overview
Erratum Journal of Investigative Dermatology
Research Snippets Journal of Investigative Dermatology
BJD Editor’s Choice Journal of Investigative Dermatology
Metabolic Vulnerability in Melanoma: A ME2 (Me Too) Story
Cells to Surgery Quiz: February 2019
25 Years of Epidermal Stem Cell Research
Journal of Investigative Dermatology
Journal of Investigative Dermatology
Hot on the Trail of Genes that Shape Our Fingerprints
Gopinathan K. Menon  Journal of Investigative Dermatology 
Journal of Investigative Dermatology
Journal of Investigative Dermatology
The Environment and Human Health
Redistribution of LRIG Proteins in Psoriasis
Identification of a Commonly Used CDR3 Region of Infiltrating T Cells Expressing Vβ13 and Vβ15 Derived From Psoriasis Patients  Ha Young Hwang, Young.
Making New Connections—Chromosome Conformation Capture for Identification of Disease-Associated Target Genes  Matthew T. Patrick, Lam C. Tsoi, Johann.
Recent Developments in Single-Cell RNA-Seq of Microorganisms
Presentation transcript:

Research Techniques Made Simple: Single-Cell RNA Sequencing and its Applications in Dermatology  Xiaojun Wu, Bin Yang, Imo Udo-Inyang, Suyun Ji, David Ozog, Li Zhou, Qing-Sheng Mi  Journal of Investigative Dermatology  Volume 138, Issue 5, Pages 1004-1009 (May 2018) DOI: 10.1016/j.jid.2018.01.026 Copyright © 2018 The Authors Terms and Conditions

Figure 1 The development history of single cell sequencing. ScRNA sequencing was first performed in a mouse 4-cell stage blastomere in 2009. A few years later, the first multiplexed scRNA sequencing methodology was developed. In 2014, a commercial single-cell platform became available. Drop-Seq and Seq-Well, more efficient single cell library preparation platforms, were recently invented. Seq, sequencing; ScRNA, single cell RNA. Journal of Investigative Dermatology 2018 138, 1004-1009DOI: (10.1016/j.jid.2018.01.026) Copyright © 2018 The Authors Terms and Conditions

Figure 2 General single cell RNA sequencing procedure. Normal or lesion skin is freshly harvested and then the epidermis and dermis are further separated to generate a single cell suspension. Sorted single cells of interest are loaded onto a single cell isolating device. The barcoded and amplified cDNA is used to generate libraries for sequencing. The sequencing data is analyzed based on available analysis pipelines. RT, reverse transcription; SC, single cell; tSNE, t-distributed stochastic neighbor embedding. Journal of Investigative Dermatology 2018 138, 1004-1009DOI: (10.1016/j.jid.2018.01.026) Copyright © 2018 The Authors Terms and Conditions

Figure 3 Defining the main epidermal cell populations. Adapted from Joost et al. (2016). max, maximum; tSNE, t-distributed stochastic neighbor embedding. Journal of Investigative Dermatology 2018 138, 1004-1009DOI: (10.1016/j.jid.2018.01.026) Copyright © 2018 The Authors Terms and Conditions