Consolidation of Gephi Stats Kristen Horstmann 3.2.17
Closeness centrality Measure of centrality in a network, calculated as average length of the shortest path between the node and all other nodes. Smaller closeness score: closer to many other nodes in the graph, smaller diameter and distance
id HAP4 1 2 3 4 5 6 7 8 9 10 11 ACE2 0.5 0.243902 0.419355 0.309524 0.297872 0.333333 0.184211 0.434783 0.255319 0.285714 ASH1 0.666667 0.384615 0.411765 0.375 0.388889 0.22807 0.344828 CIN5 0.636364 0.357143 0.351351 0.259259 0.36 0.215385 0.230769 GCR2 0.458333 0.371429 0.6 0.433333 0.269231 0.190476 GLN3 0.361111 0.218182 0.521739 0.44 0.324324 0.40625 0.244898 0.358974 0.428571 0.166667 0.529412 0.25 HMO1 0.55 0.277778 0.288889 0.315789 0.205882 0.318182 0.272727 0.323529 MSN2 0.769231 0.482759 0.245614 0.444444 0.292683 0.393939 SFP1 0.4 0.342105 0.341463 0.407407 STB5 0.37037 0.3 0.473684 0.352941 SWI4 0.8 0.28 0.27451 0.413793 0.368421 0.28125 0.171429 SWI5 0.322581 0.481481 0.264151 0.35 0.307692 YHP1 0.3125 0.378378 0.461538 0.196721 0.392857 YOX1 0.217391 0.325581 0.206897 ZAP1 0.363636
Harmonic Centrality Reverses the sum and reciprocal operations in the definition of closeness centrality Higher number indicates greater centrality
id HAP4 1 2 3 4 5 6 7 8 9 10 11 ACE2 0.611111 0.326667 0.525641 0.367949 0.355952 0.456667 0.27894 0.566667 0.395933 0.361667 ASH1 0.75 0.495 0.411538 0.424405 0.511905 0.475 0.540476 0.326587 0.42 CIN5 0.761905 0.428333 0.444872 0.361538 0.360714 0.498148 0.284609 0.654762 0.381581 0.6 GCR2 0.5 0.536667 0.496154 0.722222 0.346429 0.680556 0.538462 0.338095 0.288525 GLN3 0.478333 0.457692 0.412831 0.625 0.553704 0.560606 0.493849 0.487179 0.391171 0.44881 0.506944 0.461667 0.258648 0.62963 0.382143 HMO1 0.651515 0.351667 0.366667 0.377778 0.440476 0.490741 0.325879 0.409524 0.420933 0.4 MSN2 0.85 0.578333 0.589286 0.332823 0.552083 0.411111 0.515385 SFP1 0.520833 0.447436 0.302778 0.40119 0.514286 0.464286 STB5 0.547222 0.486667 0.398718 0.431349 0.601852 0.421429 0.595238 0.454167 SWI4 0.875 0.388095 0.340476 0.493056 0.460714 0.608333 0.383333 0.379167 0.27249 SWI5 0.395 0.596154 0.465278 0.322619 0.429762 0.445238 0.433333 YHP1 0.458333 0.5625 0.628788 0.285152 0.484848 YOX1 0.310238 0.456944 0.574074 0.495238 0.378571 0.298247 ZAP1 0.397222 0.435185 0.312585 0.4375
Betweenness Centrality centrality measure that indicates how often a node is found on a shortest path between two nodes, s and t. Nodes with high betweenness are higher connected with regulating other genes
id HAP4 1 2 3 4 5 6 7 8 9 10 11 ACE2 14 63.5 13.5 15.5 27 34.66667 ASH1 40 4.5 17 17.5 22 15 CIN5 31.5 29 35 34 78 19.5 GCR2 27.5 66.5 56.5 22.5 8.5 31 23.5 GLN3 30.5 7.5 23 74 37 11.5 25 48 HMO1 36 53 25.5 52 70 MSN2 66 73.33333 SFP1 12 21 13 99 STB5 20 84 30 55.16667 SWI4 41 13.83333 26 SWI5 43 65 3.5 44 YHP1 33.5 38 YOX1 18.5 39 24 ZAP1 19 1.5 5.5 33 48.5
Eccentricity Centrality shows how easily accessible a node is from other nodes, calculates max distance between other nodes Only takes out degree into account High value means it has a higher impact on other nodes
id HAP4 1 2 3 4 5 6 7 8 9 10 11 ACE2 0.5 0.243902 0.419355 0.309524 0.297872 0.333333 0.184211 0.434783 0.255319 0.285714 ASH1 0.666667 0.384615 0.411765 0.375 0.388889 0.22807 0.344828 CIN5 0.636364 0.357143 0.351351 0.259259 0.36 0.215385 0.230769 GCR2 0.458333 0.371429 0.6 0.433333 0.269231 0.190476 GLN3 0.361111 0.218182 0.521739 0.44 0.324324 0.40625 0.244898 0.358974 0.428571 0.166667 0.529412 0.25 HMO1 0.55 0.277778 0.288889 0.315789 0.205882 0.318182 0.272727 0.323529 MSN2 0.769231 0.482759 0.245614 0.444444 0.292683 0.393939 SFP1 0.4 0.342105 0.341463 0.407407 STB5 0.37037 0.3 0.473684 0.352941 SWI4 0.8 0.28 0.27451 0.413793 0.368421 0.28125 0.171429 SWI5 0.322581 0.481481 0.264151 0.35 0.307692 YHP1 0.3125 0.378378 0.461538 0.196721 0.392857 YOX1 0.217391 0.325581 0.206897 ZAP1 0.363636