Exometabolites exhibit directional changes over stationary phase in a three-member synthetic microbial community. Exometabolites exhibit directional changes.

Slides:

Advertisements

Similar presentations

Original Figures for "Molecular Classification of Cancer: Class Discovery and Class Prediction by Gene Expression Monitoring"

Advertisements

Word Spotting DTW.

Principal Component Analysis (PCA) for Clustering Gene Expression Data K. Y. Yeung and W. L. Ruzzo.

Terminology species data = the measured variables we want to explain (response or dependent variables) environmental data = the variables we use for explaining.

Multivariate Data Analysis Chapter 9 - Cluster Analysis

Supplementary material Figure S1. Cumulative histogram of the fitness of the pairwise alignments of random generated ESSs. In order to assess the statistical.

Principal Component Analysis (PCA) for Clustering Gene Expression Data K. Y. Yeung and W. L. Ruzzo.

Computer Science: A Structured Programming Approach Using C1 3-7 Sample Programs This section contains several programs that you should study for programming.

Copyright 2000, Media Cybernetics, L.P. Array-Pro ® Analyzer Software.

Figure S1. Schematic overview of the analytical approach in this study. For simplification, three individuals, A. B and C, are shown, in which A and B.

Dynamic Time Warping Algorithm for Gene Expression Time Series

ANOVA. Independent ANOVA Scores vary – why? Total variability can be divided up into 2 parts 1) Between treatments 2) Within treatments.

LECTURE 3 SAMPLING THEORY EPSY 640 Texas A&M University.

Statistics and Modelling 3.1 Credits: 3 Internally Assessed.

§ 5.3 Normal Distributions: Finding Values. Probability and Normal Distributions If a random variable, x, is normally distributed, you can find the probability.

Chapter 5: The Periodic Table Video. Section 1: Organizing the Elements Video 2.

A comparison of methods for characterizing the event-related BOLD timeseries in rapid fMRI John T. Serences.

CZ5225: Modeling and Simulation in Biology Lecture 3: Clustering Analysis for Microarray Data I Prof. Chen Yu Zong Tel:

A General Discussion of Probability Some “Probability Rules” Some abstract math language too! (from various internet sources)

Date of download: 6/23/2016 Copyright © 2016 SPIE. All rights reserved. Five sampling types with P=8, R=1: (a) X=0, (b) X=1, (c) X=2, (d) X=3, (e) X=4.

APPLICATION OF CLUSTER ANALYSIS AND AUTOREGRESSIVE NEURAL NETWORKS FOR THE NOISE DIAGNOSTICS OF THE IBR-2M REACTOR Yu. N. Pepelyshev, Ts. Tsogtsaikhan,

Computational Biology

CZ5211 Topics in Computational Biology Lecture 3: Clustering Analysis for Microarray Data I Prof. Chen Yu Zong Tel:

Chronic kidney disease alters intestinal microbial flora

Chronic kidney disease alters intestinal microbial flora

Supplementary Figure 1. A Case no. #1 #2 #3 #5 #6 #7 #8 #9 #10 #11 #13

Schematic representation of investigation into microbial diversity, interactions, and metabolic activity using a combined meta-omic and enrichment culture.

University of Ljubljana – Slovenia Faculty of electrical engineering

Microbial diversity was broadly compared across three unique built-environment study sites for 16S rRNA amplicon and shotgun metagenome sequencing. Microbial.

Internal QA in Open Source Development

Benchmarks of OTU picking tools on natural communities.

Do now- Pick the best solution

(A) Hierarchical clustering was performed to identify groups of patients with similar RNASeq expression of 20 genes associated with reduced survivability.

Blooms and effect sizes.

LR LS SR SS RR RS Cluster T7 Cluster T6 Cluster T4 Cluster T1

Lesson 12: Presentation and Analysis of Data

Conducting a Microbiome Study

C2 Maturity Model Experimental Validation

Γ-TEMPy: Simultaneous Fitting of Components in 3D-EM Maps of Their Assembly Using a Genetic Algorithm Arun Prasad Pandurangan, Daven Vasishtan, Frank.

NoDupe algorithm to detect and group similar mass spectra.

Microbial diversity of the 10 body locations sampled.

Optimized KatharoSeq protocol applied to a JPL cleanroom facility.

Flowchart of approaches employed to putatively annotate PMSs secreted from oral bacteria. Flowchart of approaches employed to putatively annotate PMSs.

Hierarchical cluster analysis of reproducible parent masses (MS) representative of produced SMs from oral in vitro-grown biofilm representing >100 bacterial.

Study on Method of Mass Communication Research 传播研究方法（7&8） Dr

Volume 97, Issue 3, Pages e8 (February 2018)

An RpaA-Dependent Sigma Factor Cascade Sets the Timing of Circadian Transcriptional Rhythms in Synechococcus elongatus Kathleen E. Fleming, Erin K. O’Shea

Statistical comparison of metabolites and analysis of differential metabolites and key metabolic pathways. Statistical comparison of metabolites and analysis.

Structure of benthic microbial communities of residential and industrial land use types before and after two rain events in urban waterways are shown.

ncRNAs are developmentally regulated as well as mRNAs.

Distribution of microbial functions in urban waterways.

Volume 21, Issue 9, Pages (November 2017)

Clustering The process of grouping samples so that the samples are similar within each group.

Experimental design. Experimental design. (a) Configuration of the sampling site in Flagstaff office 1. This configuration was similar to those set up.

Volume 118, Issue 2, Pages (July 2004)

Volume 7, Issue 2, Pages (August 2010)

Core type 1 interferon (IFN-1)-associated genes are more highly expressed in myeloid subsets. Core type 1 interferon (IFN-1)-associated genes are more.

Label frequency and average enrichment of taxa.

Jeffrey R. Groff, Gregory D. Smith Biophysical Journal

Γ-TEMPy: Simultaneous Fitting of Components in 3D-EM Maps of Their Assembly Using a Genetic Algorithm Arun Prasad Pandurangan, Daven Vasishtan, Frank.

Building groupings based on culture density, diversity, and drug resistance phenotypes. Building groupings based on culture density, diversity, and drug.

Microbial communities of the differently treated mice with lupus cluster separately after treatment. Microbial communities of the differently treated mice.

Benchmarks of OTU picking tools on artificial communities.

Association of specific phylotypes with walnut consumption and carcinogen exposure (Study 2). Association of specific phylotypes with walnut consumption.

Expression profiles of 87 miRNAs expressed in SC

K-means clusters of T. elongatus and M

Hierarchically clustered heat map showing correlations between the relative abundances of microbial species and the levels of volatile compounds in kefir.

Median unweighted UniFrac distances between three dolphin habitats: Shedd, MMP, and Sarasota. Median unweighted UniFrac distances between three dolphin.

Presentation transcript:

Exometabolites exhibit directional changes over stationary phase in a three-member synthetic microbial community. Exometabolites exhibit directional changes over stationary phase in a three-member synthetic microbial community. Shown is a heat map of 977 mass feature changes over time within a three-member community, where samples are columns and features are rows. Each sample is the average of four time point replicates, each started independently from new cultures. Euclidean distance was calculated from Z-scored mass spectral profiles. Features with similar dynamics were clustered by Ward’s method. Letter designations for clusters were added post hoc to aid in discussion. “QC” is quality control series, an even composite of all experimental samples that was run at regular intervals on the mass spectrometer to assess instrument stability and feature consistency. John L. Chodkowski, and Ashley Shade mSystems 2017; doi:10.1128/mSystems.00129-17