Molecular Genotyping of Hydatidiform Moles

Slides:



Advertisements
Similar presentations
Measurement of Relative Copy Number of CDKN2A/ARF and CDKN2B in Bladder Cancer by Real-Time Quantitative PCR and Multiplex Ligation-Dependent Probe Amplification.
Advertisements

Development of a Novel One-Tube Isothermal Reverse Transcription Thermophilic Helicase-Dependent Amplification Platform for Rapid RNA Detection James Goldmeyer,
CyclinD1/CyclinD3 Ratio by Real-Time PCR Improves Specificity for the Diagnosis of Mantle Cell Lymphoma Carol D. Jones, Katherine H. Darnell, Roger A.
Design and Multiseries Validation of a Web-Based Gene Expression Assay for Predicting Breast Cancer Recurrence and Patient Survival Ryan K. Van Laar The.
Accurate Molecular Characterization of Formalin-Fixed, Paraffin-Embedded Tissues by microRNA Expression Profiling Anna E. Szafranska, Timothy S. Davison,
Margaret L. Gulley, Thomas C. Shea, Yuri Fedoriw 
Algorithmic Approach to Diagnosis of Hydatidiform Moles
Bone Marrow Transplant Engraftment Analysis with Loss of an Informative Allele  Steven A. Schichman, Pei Lin, Lori J. Gilbrech, Pamela S. Gray, Carla S.
Statistical Considerations for Immunohistochemistry Panel Development after Gene Expression Profiling of Human Cancers  Rebecca A. Betensky, Catherine.
Genotyping of DNA Samples Isolated from Formalin-Fixed Paraffin-Embedded Tissues Using Preamplification  Renee Baak-Pablo, Vincent Dezentje, Henk-Jan.
Margaret L. Gulley, Thomas C. Shea, Yuri Fedoriw 
Laboratory Guidelines for Detection, Interpretation, and Reporting of Maternal Cell Contamination in Prenatal Analyses  Narasimhan Nagan, Nicole E. Faulkner,
Comparison of Snap Freezing versus Ethanol Fixation for Gene Expression Profiling of Tissue Specimens  Mark A. Perlmutter, Carolyn J.M. Best, John W.
Molecular Genetics of Pediatric Soft Tissue Tumors
Analysis of T-Cell Clonality Using Laser Capture Microdissection and High-Resolution Microcapillary Electrophoresis  Evgeny Yakirevich, Cynthia L. Jackson,
Distinguishing de Novo Second Cancer Formation from Tumor Recurrence
Immunoguided Laser Assisted Microdissection Techniques for DNA Methylation Analysis of Archival Tissue Specimens  Franziska C. Eberle, Jeffrey C. Hanson,
Mutation Screening in Juvenile Polyposis Syndrome
Simultaneous Genotyping of GSTT1 and GSTM1 Null Polymorphisms by Melting Curve Analysis in Presence of SYBR Green I  Fátima Marín, Nadia García, Xavier.
FISH Analysis for the Detection of Lymphoma-Associated Chromosomal Abnormalities in Routine Paraffin-Embedded Tissue  Roland A. Ventura, Jose I. Martin-Subero,
Increased Sensitivity of the Roche COBAS AMPLICOR HCV Test, Version 2
Abnormal Villous Morphology Associated with Triple Trisomy of Paternal Origin  Alexis Norris-Kirby, Jill M. Hagenkord, Malti P. Kshirsagar, Brigitte M.
Sarah Chiang, Ladan Fazlollahi, Anhthu Nguyen, Rebecca A
Analysis of HER2 Gene Amplification Using an Automated Fluorescence in Situ Hybridization Signal Enumeration System  Rachel Stevens, Imad Almanaseer,
Molecular Diagnostic Approach to Non-Hodgkin's Lymphoma
Patrick R. Murray  The Journal of Molecular Diagnostics 
William L. Gerald, M.D., Ph.D, 1954–2008
Bone Marrow Transplant Engraftment Analysis with Loss of an Informative Allele  Steven A. Schichman, Pei Lin, Lori J. Gilbrech, Pamela S. Gray, Carla S.
The Human Androgen Receptor X-Chromosome Inactivation Assay for Clonality Diagnostics of Natural Killer Cell Proliferations  Michaël Boudewijns, Jacques.
Multi-Site PCR-Based CMV Viral Load Assessment-Assays Demonstrate Linearity and Precision, but Lack Numeric Standardization  Daynna J. Wolff, Denise LaMarche.
Expression of Two Breast-Specific Molecules in the Lung
Genotyping of Frequent BRCA1/2 SNPs with Unlabeled Probes
Capillary Electrophoresis Artifact Due to Eosin
Delineation of HER2 Gene Status in Breast Carcinoma by Silver in Situ Hybridization is Reproducible among Laboratories and Pathologists  Antonino Carbone,
Comparison of KRAS Mutation Analysis and FISH for Detecting Pancreatobiliary Tract Cancer in Cytology Specimens Collected During Endoscopic Retrograde.
The Molecular Pathology of Primary Immunodeficiencies
Assessment of the Frequency of Allelic Imbalance in Human Tissue Using a Multiplex Polymerase Chain Reaction System  Christopher M. Heaphy, William C.
Amplification Patterns of Three Genomic Regions Predict Distant Recurrence in Breast Carcinoma  Lisa M. Davis, Cole Harris, Lei Tang, Patti Doherty, Peter.
Detection and Discrimination between Deletional and Non-Deletional Prader-Willi and Angelman Syndromes by Methylation-Specific PCR and Quantitative Melting.
Molecular Diagnosis of Metastasizing Oligodendroglioma
Rare Sequence Variation in the Genome Flanking a Short Tandem Repeat Locus Can Lead to a Question of “Nonmaternity”  Anne Deucher, Tsoyu Chiang, Iris.
Testing for Maternal Cell Contamination in Prenatal Samples
Jennifer A. Hempelmann, Sheena M. Scroggins, Colin C
Detection of BRAF V600E Mutation in Colorectal Cancer
A Simple, High-Throughput Assay for Fragile X Expanded Alleles Using Triple Repeat Primed PCR and Capillary Electrophoresis  Elaine Lyon, Thomas Laver,
Kathleen M. Murphy, Julie S. Cohen, Amy Goodrich, Patricia P
Design and Evaluation of a Real-Time PCR Assay for Quantification of JAK2 V617F and Wild-Type JAK2 Transcript Levels in the Clinical Laboratory  Jason.
Detection of the JAK2 V617F Mutation by LightCycler PCR and Probe Dissociation Analysis  Marla Lay, Rajan Mariappan, Jason Gotlib, Lisa Dietz, Siby Sebastian,
Ye Bang-Ce, Chu Xiaohe, Fan Ye, Li Songyang, Yin Bincheng, Zuo Peng 
Maria Erali, David C. Pattison, Carl T. Wittwer, Cathy A. Petti 
Homozygous Transthyretin Mutation in an African American Male
Performance and Clinical Evaluation of a Sensitive Multiplex Assay for the Rapid Detection of Common NPM1 Mutations  Michael Hafez, Fei Ye, Keith Jackson,
Multiple Sequence Variants in Hereditary Hemorrhagic Telangiectasia Cases  Jamie McDonald, Friederike Gedge, Allene Burdette, James Carlisle, Changkuoth.
Amplification Refractory Mutation System, a Highly Sensitive and Simple Polymerase Chain Reaction Assay, for the Detection of JAK2 V617F Mutation in Chronic.
Multiplex PCR Detection of GSTM1, GSTT1, and GSTP1 Gene Variants
Benjamin A. Rybicki, Robert C. Elston 
The Distribution of Gene Segments in T-Cell Receptor γ Gene Rearrangements Demonstrates the Need for Multiple Primer Sets  Lyle C. Lawnicki, Ronald J.
Improved Detection of KIT Exon 11 Duplications in Formalin-Fixed, Paraffin-Embedded Gastrointestinal Stromal Tumors  Jerzy Lasota, Bartosz Wasag, Sonja.
A Novel and Rapid Method of Determining the Effect of Unclassified MLH1 Genetic Variants on Differential Allelic Expression  Sheron Perera, Brian Li,
Triplet Repeat Primed PCR (TP PCR) in Molecular Diagnostic Testing for Friedreich Ataxia  Paola Ciotti, Emilio Di Maria, Emilia Bellone, Franco Ajmar,
Rapid Allelic Discrimination by TaqMan PCR for the Detection of the Gilbert's Syndrome Marker UGT1A1*28  Ursula Ehmer, Tim O. Lankisch, Thomas J. Erichsen,
Karen Snow-Bailey, Ph.D., 1961–2006
Kathleen M. Murphy, Tanya Geiger, Michael J. Hafez, James R
Comparison of Sanger Sequencing, Pyrosequencing, and Melting Curve Analysis for the Detection of KRAS Mutations  Athanasios C. Tsiatis, Alexis Norris-Kirby,
Xiangfeng Cui, Helen Feiner, Honghua Li 
Detection of BRCA1 and BRCA2 Ashkenazi Jewish Founder Mutations in Formalin- Fixed Paraffin-Embedded Tissues Using Conventional PCR and Heteroduplex/Amplicon.
Immunohistochemistry versus Microsatellite Instability Testing for Screening Colorectal Cancer Patients at Risk for Hereditary Nonpolyposis Colorectal.
Angiotensin I-Converting Enzyme
Monique A. Johnson, Marvin J. Yoshitomi, C. Sue Richards 
Measurement of Relative Copy Number of CDKN2A/ARF and CDKN2B in Bladder Cancer by Real-Time Quantitative PCR and Multiplex Ligation-Dependent Probe Amplification 
Presentation transcript:

Molecular Genotyping of Hydatidiform Moles Kathleen M. Murphy, Thomas G. McConnell, Michael J. Hafez, Russell Vang, Brigitte M. Ronnett  The Journal of Molecular Diagnostics  Volume 11, Issue 6, Pages 598-605 (November 2009) DOI: 10.2353/jmoldx.2009.090039 Copyright © 2009 American Society for Investigative Pathology and Association for Molecular Pathology Terms and Conditions

Figure 1 Examples of H&E, p57 immunohistochemistry, and molecular genotyping for typical cases of NM, PHM, and CHM. A: NM. Immature villi are small and have a polarized trophoblast. P57 is expressed in the nuclei of villous stromal cells and the cytotrophoblast. Molecular genotyping demonstrates bi-parental diploidy. B: PHM. Variably sized villi have highly irregularly shapes (“scalloping”) and trophoblastic inclusions but minimal trophoblastic hyperplasia. P57 is expressed in the nuclei of villous stromal cells and the cytotrophoblast. Molecular genotyping demonstrates diandric triploidy. C: CHM. Enlarged hydropic villus exhibits circumferential trophoblastic hyperplasia. Villous stromal cells and cytotrophoblast lack nuclear expression of p57 (intermediate trophoblastic cells are positive and serve as an internal positive control). Molecular genotyping demonstrates androgenetic diploidy. D = decidua, V = villous. Paternal (P) and likely maternal (M) alleles are identified in the villous tissue. The allele ratio (R) in the villous tissue is shown when two alleles are present. The Journal of Molecular Diagnostics 2009 11, 598-605DOI: (10.2353/jmoldx.2009.090039) Copyright © 2009 American Society for Investigative Pathology and Association for Molecular Pathology Terms and Conditions

Figure 2 Capillary electrophoresis data from one STR locus demonstrating the effect of poor amplification (A) on allele ratios (R) compared with robust amplification (B). The Journal of Molecular Diagnostics 2009 11, 598-605DOI: (10.2353/jmoldx.2009.090039) Copyright © 2009 American Society for Investigative Pathology and Association for Molecular Pathology Terms and Conditions

Figure 3 Capillary electrophoresis data (Case 1 and 2) and hypothetical data demonstrating problems due to decidual tissue (D) admixed into the villous specimen. In all cases the decidua is homozygous. On first analysis of Case 1, the ratio of the alleles in the villous tissue (V1) appeared to be consistent with triploidy (2.0). After more careful microdissection (V2), the ratio of the alleles in the villous tissue was 1.2, which is consistent with diploidy. On first analysis of Case 2, the ratio of the alleles in the villous tissue (V1) appeared to be consistent with diploidy (0.73). After more careful microdissection (V2), the ratio of the alleles in the villous tissue was 0.55, which is consistent with triploidy. The hypothetical data demonstrate that androgenetically diploid villous tissue with decidual contamination (V1) can have allele ratios that appear to be consistent with triploidy (0.33). The Journal of Molecular Diagnostics 2009 11, 598-605DOI: (10.2353/jmoldx.2009.090039) Copyright © 2009 American Society for Investigative Pathology and Association for Molecular Pathology Terms and Conditions

Figure 4 STR interpretation algorithm. NI = not informative; * = diandric, not digynic, triploidy is consistent with PHM. If the source of the triploidy cannot be determined from any of the loci, the data should be interpreted carefully in the context of the morphology. The Journal of Molecular Diagnostics 2009 11, 598-605DOI: (10.2353/jmoldx.2009.090039) Copyright © 2009 American Society for Investigative Pathology and Association for Molecular Pathology Terms and Conditions