Effect of altered 3′UTR on miRNA-mediated gene regulation.

Slides:



Advertisements
Similar presentations
More regulating gene expression. Fig 16.1 Gene Expression is controlled at all of these steps: DNA packaging Transcription RNA processing and transport.
Advertisements

GENE REGULATION RESULTS IN DIFFERENTIAL GENE EXPRESSION, LEADING TO CELL SPECIALIZATION Eukaryotic DNA.
COURSE OF BIOINFORMATICS Exam_30/01/2014 A.
Homework #2 is due 10/17 Bonus #1 is due 10/24 Office hours: M 10/ :30am 2-5pm in Bio 6.
Date of download: 7/10/2016 Copyright © 2016 McGraw-Hill Education. All rights reserved. Basic steps of gene expression—transcription factors regulate.
A B C D Rao et al., 2012; Supplementary Figure S1 p = 0.03 p = NS
Proteins enriched in HCs are strongly associated with genetic hearing/balance impairment. Proteins enriched in HCs are strongly associated with genetic.
Volume 107, Issue 7, Pages (December 2001)
Behaviorally dependent allele-specific expression.
Phosphorylation and sequence disorder in microtubule-associated protein Tau.A, schematic illustration of the domain profile of Tau with all known phosphorylation.
Combinatorial effects of microRNAs to suppress the Myc oncogenic pathway by María J. Bueno, Marta Gómez de Cedrón, Gonzalo Gómez-López, Ignacio Pérez de.
Transcription Factor/microRNA Axis Blocks Melanoma Invasion Program by miR-211 Targeting NUAK1  Rachel E. Bell, Mehdi Khaled, Dvir Netanely, Steffen Schubert,
Raymond J. Kelleher, Arvind Govindarajan, Susumu Tonegawa  Neuron 
ATM Gene Mutations Result in Both Recessive and Dominant Expression Phenotypes of Genes and MicroRNAs  Denis A. Smirnov, Vivian G. Cheung  The American.
A PASport to Cellular Proliferation
Taichi Umeyama, Takashi Ito  Cell Reports 
Loss of imprinting at the 14q32 domain is associated with microRNA overexpression in acute promyelocytic leukemia by Floriana Manodoro, Jacek Marzec, Tracy.
mRNA Degradation and Translation Control
SP1 was a downstream target of miR-150-3p
Genetic variation in DREs could be a causative factor in dysregulation of distal target gene expression. Genetic variation in DREs could be a causative.
ADV-1 downstream targets identified by ChIP-seq and RNA-seq are enriched for ccgs. ADV-1 downstream targets identified by ChIP-seq and RNA-seq are enriched.
Figure 3. Genes differentially expressed in batch cultures during adaptation to low temperature. Genes differentially expressed in batch cultures during.
The Antisense Transcriptomes of Human Cells
Volume 48, Issue 5, Pages (December 2012)
Integrative Multi-omic Analysis of Human Platelet eQTLs Reveals Alternative Start Site in Mitofusin 2  Lukas M. Simon, Edward S. Chen, Leonard C. Edelstein,
Comparison of Nuclear, Eukaryotic RNA Polymerases
Genome-wide analysis of p53 occupancy.
Pairing beyond the Seed Supports MicroRNA Targeting Specificity
Recombination rates at various locations in the genome.
Expression of Alternative Ago2 Isoform Associated with Loss of microRNA-Driven Translational Repression in Mouse Oocytes  Jacob W. Freimer, Raga Krishnakumar,
Bar plot representation of the transcriptomic changes in Δsaci_ptp and Δsaci_pp2a. Bar plot representation of the transcriptomic changes in Δsaci_ptp and.
Volume 9, Issue 5, Pages (November 2017)
Validation of ChIP-seq reads.
Genome-wide binding sites of OsMADS1 and the distribution of binding sites in different regions of annotated genes. Genome-wide binding sites of OsMADS1.
Baekgyu Kim, Kyowon Jeong, V. Narry Kim  Molecular Cell 
Comparison of observed and predicted coverage patterns.
Volume 35, Issue 2, Pages (August 2011)
QRT-PCR analysis of the role of MDL-1 in expression of infection-regulated genes. qRT-PCR analysis was performed on infection-regulated genes that have.
Fig. 2 ALRN-6924 rapidly increases transcription at the p21 locus and affects its bursting dynamics. ALRN-6924 rapidly increases transcription at the p21.
A multitiered approach to characterize transcriptome structure.
Transcript length distribution resulting from different assemblies of the embryo samples across the three technologies (HiSeq, MiSeq, and PacBio). Transcript.
ATM Gene Mutations Result in Both Recessive and Dominant Expression Phenotypes of Genes and MicroRNAs  Denis A. Smirnov, Vivian G. Cheung  The American.
Evolutionary History of the ADRB2 Gene in Humans
Rational Design of Therapeutic siRNAs: Minimizing Off-targeting Potential to Improve the Safety of RNAi Therapy for Huntington's Disease  Ryan L Boudreau,
Peptide abundances are uniformly distributed across the capsid protein in the recoded T7 strain. Peptide abundances are uniformly distributed across the.
Mean C-to-U editing ratios for most editing sites map to a region on chromosome 6 at 122 Mb. (A) Genome scan of mean C-to-U editing for 70 editing sites.
The first two principal components for the islet gene expression data for the 181 microarray probes that map to the chromosome 6 trans-eQTL hotspot with.
Cell system for following and quantifying single-gene transcription in fixed and living cells. Cell system for following and quantifying single-gene transcription.
Statistics of cleavage sites and mutant-enriched sites.
The Bov-A2 element is conserved in the NOS2 gene of bovid species.
Spatial distribution of individual genotypes in a subpart (of size 500 grid units × 700 grid units) of the total grid after the last cycle in one replicate.
Analysis of renal transcriptome responses identifies LX-regulated transcriptional networks. Analysis of renal transcriptome responses identifies LX-regulated.
Box plots and scatterplots showing the distribution of miRNA-binding site number difference between the stable and unstable alleles for genes with significant.
Gene P-values (−log10) of significant genes at the 1% nominal level in Europe (red bars), in Asia (blue bars,) or both continents (black bars) from the.
Figure 2 Signalling downstream of the IL-6 receptor
Presentation by: Bryan Lopez UCF - BSC 4434 Professor Xiaoman Li
Enrichment of miRNAs among DPAR genes and their relative expression under dietary restriction. Enrichment of miRNAs among DPAR genes and their relative.
Sequence variation of 16S rRNA gene primer-binding sites.
Comparison of rDNA histone modifications between mESCs and mNPCs.
Taichi Umeyama, Takashi Ito  Cell Reports 
The Untranslated Regions of mRNAs in Cancer
ERF12 Binds Directly to the DRE/CRT Element in the DOG1 Promoter.
Regulation of KSHV Lytic Switch Protein Expression by a Virus-Encoded MicroRNA: An Evolutionary Adaptation that Fine-Tunes Lytic Reactivation  Priya Bellare,
HBoV1 transcription map.
A Splicing-Independent Function of SF2/ASF in MicroRNA Processing
Phylogeny and expression landscape of Wolbachia in D. melanogaster.
A Double-Switch Vector System Positively Regulates Transgene Expression by Endogenous microRNA Expression (miR-ON Vector)  Mario Amendola, Alice Giustacchini,
Integrated analysis of gene expression and copy number alterations.
Mutant TERT promoter displays active histone marks and distinct long-range interactions: A, cell lines that were used in the study with their origin and.
Small RNA sequencing data quality.
Presentation transcript:

Effect of altered 3′UTR on miRNA-mediated gene regulation. Effect of altered 3′UTR on miRNA-mediated gene regulation. (A) Schematic describing the location of miRNA binding sites with respect to the proximal and distal polyadenylation events. (B) The miRNA binding sites that were predicted to be associated with stitched transcripts across different transcriptomes. (C) The distribution of miRNA binding sites on the transcripts at the regions spanning the proximal and distal polyadenylation sites. (D) The bar plot shows the number of the degradome tags mapped to the transcripts on either the proximal (positive y-axis) or distal (negative y-axis) polyadenylation site. miRNA, microRNA; UTR, untranslated region. Vairavan Lakshmanan et al. G3 2016;6:3035-3048 ©2016 by Genetics Society of America