Volume 10, Issue 11, Pages (November 2017)

Slides:

Advertisements

Similar presentations

Supplementary Figure S1 Distribution of observed (blue) and Poisson expected (red) standard deviation of human-chimpanzee divergence over different window.

Advertisements

Yuming Lu, Jian-Kang Zhu Molecular Plant

Frequency of Nonallelic Homologous Recombination Is Correlated with Length of Homology: Evidence that Ectopic Synapsis Precedes Ectopic Crossing-Over

The Genetic Basis of White Tigers

Volume 8, Issue 6, Pages (June 2015)

Volume 8, Issue 6, Pages (June 2015)

Volume 9, Issue 11, Pages (November 2016)

Volume 10, Issue 4, Pages (April 2017)

Volume 10, Issue 7, Pages (July 2017)

Volume 11, Issue 3, Pages (March 2018)

Volume 74, Issue 5, Pages (November 2018)

Harnessing the Potential of the Tea Tree Genome

Volume 11, Issue 3, Pages (March 2018)

Volume 10, Issue 10, Pages (October 2017)

Volume 8, Issue 2, Pages (February 2015)

Volume 18, Issue 9, Pages (February 2017)

Volume 21, Issue 3, Pages (October 2017)

Michael Cullen, Stephen P

Roger B. Deal, Steven Henikoff Developmental Cell

Volume 11, Issue 1, Pages (January 2018)

Discovery and Characterization of piRNAs in the Human Fetal Ovary

Volume 146, Issue 6, Pages (September 2011)

Volume 11, Issue 7, Pages (July 2018)

Rapid Decoding of Sequence-Specific Nuclease-Induced Heterozygous and Biallelic Mutations by Direct Sequencing of PCR Products Xingliang Ma, Letian Chen,

Decoding NF1 Intragenic Copy-Number Variations

Volume 10, Issue 4, Pages (April 2017)

High-Resolution Expression Map of the Arabidopsis Root Reveals Alternative Splicing and lincRNA Regulation Song Li, Masashi Yamada, Xinwei Han, Uwe Ohler,

Volume 21, Issue 3, Pages (October 2017)

Whole genome characterization of hepatitis B virus quasispecies with massively parallel pyrosequencing F. Li, D. Zhang, Y. Li, D. Jiang, S. Luo, N. Du,

Volume 18, Issue 5, Pages (November 2015)

Detailed Characterization of Alterations of Chromosomes 7, 9, and 10 in Glioblastomas as Assessed by Single-Nucleotide Polymorphism Arrays Inês Crespo,

Volume 10, Issue 8, Pages (March 2015)

Volume 9, Issue 11, Pages (November 2016)

Volume 10, Issue 2, Pages (February 2017)

Volume 7, Issue 9, Pages (September 2014)

Volume 10, Issue 7, Pages (July 2017)

Volume 9, Issue 12, Pages (December 2016)

Volume 9, Issue 2, Pages (August 2017)

X-Linked Congenital Hypertrichosis Syndrome Is Associated with Interchromosomal Insertions Mediated by a Human-Specific Palindrome near SOX3 Hongwen.

Human Genomic Deletions Mediated by Recombination between Alu Elements

Volume 8, Issue 3, Pages (March 2015)

Volume 128, Issue 6, Pages (March 2007)

Volume 11, Issue 4, Pages (April 2018)

A DNA Replication Mechanism for Generating Nonrecurrent Rearrangements Associated with Genomic Disorders Jennifer A. Lee, Claudia M.B. Carvalho, James.

Volume 11, Issue 1, Pages (January 2018)

Volume 10, Issue 6, Pages (June 2017)

Volume 10, Issue 10, Pages (October 2017)

Volume 8, Issue 3, Pages (March 2015)

Volume 8, Issue 6, Pages (June 2015)

A Sequencing-Based Linkage Map of Cucumber

Complete Haplotype Sequence of the Human Immunoglobulin Heavy-Chain Variable, Diversity, and Joining Genes and Characterization of Allelic and Copy-Number.

Volume 11, Issue 3, Pages (March 2018)

Volume 10, Issue 12, Pages (December 2017)

Targeted Genome Editing in Genes and cis-Regulatory Regions Improves Qualitative and Quantitative Traits in Crops Xitao Li, Yongyao Xie, Qinlong Zhu,

Gene Density, Transcription, and Insulators Contribute to the Partition of the Drosophila Genome into Physical Domains Chunhui Hou, Li Li, Zhaohui S.

Volume 9, Issue 3, Pages (November 2014)

Volume 10, Issue 3, Pages (March 2017)

Volume 7, Pages (January 2019)

Volume 9, Issue 7, Pages (July 2016)

Zvi Tamari, Naama Barkai Cell Reports

Volume 22, Issue 2, Pages (April 2006)

Volume 10, Issue 3, Pages (March 2017)

Volume 21, Issue 23, Pages (December 2011)

Volume 12, Issue 1, Pages (January 2019)

Next-Generation Sequencing of Duplication CNVs Reveals that Most Are Tandem and Some Create Fusion Genes at Breakpoints Scott Newman, Karen E. Hermetz,

Gene Body CG and CHG Methylation and Suppression of Centromeric CHH Methylation are Mediated by DECREASE IN DNA METHYLATION1 in Rice Hisataka Numa, Katsushi.

Wxlv, the Ancestral Allele of Rice Waxy Gene

Comparative Population Genomics Reveals Strong Divergence and Infrequent Introgression between Asian and African Rice Xuehui Huang, Qiang Zhao, Bin Han

Exploring and Exploiting Pan-genomics for Crop Improvement

DNA Damage-Induced Transcription of Transposable Elements and Long Non-coding RNAs in Arabidopsis Is Rare and ATM-Dependent Zhenxing Wang, Rainer Schwacke,

Presentation transcript:

Volume 10, Issue 11, Pages 1465-1468 (November 2017) PacBio Sequencing Reveals Transposable Elements as a Key Contributor to Genomic Plasticity and Virulence Variation in Magnaporthe oryzae Jiandong Bao, Meilian Chen, Zhenhui Zhong, Wei Tang, Lianyu Lin, Xingtan Zhang, Haolang Jiang, Deyu Zhang, Chenyong Miao, Haibao Tang, Jisen Zhang, Guodong Lu, Ray Ming, Justice Norvienyeku, Baohua Wang, Zonghua Wang Molecular Plant Volume 10, Issue 11, Pages 1465-1468 (November 2017) DOI: 10.1016/j.molp.2017.08.008 Copyright © 2017 The Authors Terms and Conditions

Figure 1 Whole-Genome Characterization of TE, Gene, and Chromosomal Translocation in Magnaporthe oryzae. (A) Chromosomes/contigs. Long contigs more than 50 kb were sorted and orientated according to chromosomes of 70-15. (B) Secreted proteins (SPs) frequency calculated in 10 kb non-overlapping sliding windows. (C) Gene distribution. Presence/absence of variation of genes was analyzed with an additional 60 isolates. Blue lines indicate core genes present in all of the additional 60 isolates and green lines indicate lineage-specific (LS) genes, which have presence/absence of polymorphism in the 60 isolates. (D) Distribution of transposable elements (TEs). (E) Inter-chromosomal translocation. Different colored lines from different chromosome linked to same contig indicate translocation events. (F) LS regions but not isolate-specific regions contain more SP genes. Genes absent in any other isolate are defined as a “unique gene” marked in red. (G) Proportion of TE-associated genes that encode SPs is higher than non-SPs. Genes with a 1 kb flanking region inserted by TE are defined as TE-associated genes. (H) Large-scale inter-chromosomal translocation events detected by whole-genome alignments using Murasaki. The chromosome name and length of 70-15 (denoted as 7015) are shown on the x axis; contig name (number) and length of FJ81278 (FJ, green) and Guy11 (G, red) are shown on the y axis. Gray lines on the x axis represent the chromosome end of 70-15, while green and red lines on the y axis represent FJ81278 and Guy11 contigs, respectively. (I) TE mediated the Chr1/Chr6 inter-chromosome rearrangement in FJ81278, validated by long-read mapping with Sniffles. This event was also observed in the third contig of FJ81278 (A; marked with an asterisk) and shown as a green broken anti-diagonal line in (H). Molecular Plant 2017 10, 1465-1468DOI: (10.1016/j.molp.2017.08.008) Copyright © 2017 The Authors Terms and Conditions