Affine Gap Alignment - An improved global alignment

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Presentation transcript:

Affine Gap Alignment - An improved global alignment Code Structure Data Results interpretation Affine Gap Alignment - An improved global alignment Bio 131 individual project Yu Fu, O56922

- Fill the alignment tables (Dynamic programming) - Initialize 4 tables instead of 2 (3 alignment tables + 1 backtrack table) - Fill the alignment tables (Dynamic programming) - Fill the backtrack table - Table to Alignment Bio 131 individual project Yu Fu, O56922

- Short sequences for testing - Data - Short sequences for testing - Real Sequences Bio 131 individual project Yu Fu, O56922

It works! - Data - Short sequences for testing - Result Bio 131 individual project Yu Fu, O56922

- Data - Real Sequences Score = -4624 Score = -903 Bio 131 individual project Yu Fu, O56922

More Gaps Less Gaps

Thank you! Bio 131 individual project Yu Fu, O56922