Diagnosis of Aerococcus urinae infections: Importance of matrix-assisted laser desorption ionization time-of-flight mass spectrometry and broad-range.

Slides:



Advertisements
Similar presentations
Models for the organisation of hospital infection control and prevention programmes B. Gordts Clinical Microbiology and Infection Volume 11, Pages
Advertisements

Laboratory diagnosis and biosafety issues of biological warfare agents
P.-Y. Lévy  Clinical Microbiology and Infection 
Rapid streptococcal testing for sore throat and antibiotic resistance
R. Dumke, H. von Baum, P.C. Lück, E. Jacobs 
A. Bergman, D. Heimer, N. Kondori, H. Enroth 
Symptomatic cytomegalovirus gastrointestinal infection with positive quantitative real- time PCR findings in apparently immunocompetent patients: a case.
Matrix-assisted laser desorption ionization time-of-flight mass spectrometry for the rapid identification of yeasts causing bloodstream infections  A.K.
Matrix-assisted laser-desorption/ionization BIOTYPER: experience in the routine of a University hospital  E. Bessède, M. Angla-gre, Y. Delagarde, S. Sep.
Helicobacter pylori resistance to antibiotics in 2014 in France detected by phenotypic and genotypic methods  A. Ducournau, L. Bénéjat, E. Sifré, E. Bessède,
Matrix-assisted laser desorption ionization time-of-flight mass spectrometry, a revolution in clinical microbial identification  A. Bizzini, G. Greub 
D. Khalil, M. Hultin, M.U. Rashid, B. Lund 
Risk factors for cryptococcal infection among patients with rheumatoid arthritis receiving different immunosuppressive medications  T.-L. Liao, Y.-M.
Migrant health—a cause for concern?
C. Bertelli, G. Greub  Clinical Microbiology and Infection 
C. Bertelli, G. Greub  Clinical Microbiology and Infection 
A.K. Reddy, P. Garg, I. Kaur  Clinical Microbiology and Infection 
Matrix‐assisted laser desorption ionization time‐of‐flight mass spectrometry for fast and accurate identification of clinically relevant Aspergillus species 
R. Cantón  Clinical Microbiology and Infection 
A.E. Muller, U. Theuretzbacher, J.W. Mouton 
Rapid streptococcal testing for sore throat and antibiotic resistance
How to evaluate and predict the ecologic impact of antibiotics: the pharmaceutical industry view from research and development  R. Bax  Clinical Microbiology.
Detection of microorganisms in blood specimens using matrix-assisted laser desorption ionization time-of-flight mass spectrometry: a review  M. Drancourt 
Matrix-assisted laser desorption ionization time-of-flight mass spectrometry: revolutionizing clinical laboratory diagnosis of mould infections  M. Gautier,
Increased incidence of nitroimidazole-refractory giardiasis at the Hospital for Tropical Diseases, London: 2008–2013  L.E.B. Nabarro, R.A. Lever, M. Armstrong,
Should standardized susceptibility testing for microbial biofilms be introduced in clinical practice?  T. Coenye, D. Goeres, F. Van Bambeke, T. Bjarnsholt 
Rapid method for direct identification of bacteria in urine and blood culture samples by matrix-assisted laser desorption ionization time-of-flight mass.
Use of mass spectrometry to identify clinical Fusarium isolates
H. Adibhesami, M. Douraghi, M. Rahbar, A. Abdollahi 
Molecular mechanism of gentamicin resistance in Bartonella henselae
Do we need new antibiotics?
Added value of molecular assay Xpert MTB/RIF compared to sputum smear microscopy to assess the risk of tuberculosis transmission in a low-prevalence country 
F. Bittar, J.-M. Rolain  Clinical Microbiology and Infection 
Laboratory diagnosis and biosafety issues of biological warfare agents
The occurrence of Legionella species other than Legionella pneumophila in clinical and environmental samples in Denmark identified by mip gene sequencing.
Aerococcus: an increasingly acknowledged human pathogen
S. Imbert, J.-Y. Brossas, M. Palous, I. Joly, I. Meyer, A. Fekkar 
Levofloxacin in the treatment of ventilator-associated pneumonia
R. Bitterman, M. Paul, D. Polak, Y. Geffen 
Automated categorization of methicillin-resistant Staphylococcus aureus clinical isolates into different clonal complexes by MALDI-TOF mass spectrometry 
A simple, robust and rapid approach to detect carbapenemases in Gram-negative isolates by MALDI-TOF mass spectrometry: validation with triple quadripole.
Detection of carbapenemases in Enterobacteriaceae: a challenge for diagnostic microbiological laboratories  J. Hrabák, E. Chudáčkova, C.C. Papagiannitsis 
Evaluation of matrix-assisted laser desorption ionization-time-of-flight mass spectrometry in comparison to rpoB gene sequencing for species identification.
Laboratory diagnosis of Clostridium difficile disease
Impact of rapid microbial identification directly from positive blood cultures using matrix- assisted laser desorption/ionization time-of-flight mass spectrometry.
Establishment of a matrix-assisted laser desorption ionization time-of-flight mass spectrometry database for rapid identification of infectious achlorophyllous.
Blood culture-based diagnosis of bacteraemia: state of the art
Evaluation of matrix-assisted laser desorption ionization-time of flight mass spectrometry for species identification of Acinetobacter strains isolated.
Systematic review of antibiotic consumption in acute care hospitals
Advantages and limitations of genomics in prokaryotic taxonomy
Identification of risk factors associated with nosocomial infection by rotavirus P4G2, in a neonatal unit of a tertiary-care hospital  R. Herruzo, F.
Y. Huang, B. Yang, W. Li  Clinical Microbiology and Infection 
Accurate hepatitis C virus genotyping and selection of optimal therapy: lessons from a St Petersburg strain infection  E. Knops, E. Heger  Clinical Microbiology.
Vaccinations against respiratory tract infections at Hajj
Correlation between clinical data and antibiotic resistance in coagulase-negative Staphylococcus species isolated from 68 patients with acute post-cataract.
Dynamics of hepatitis B virus quasispecies heterogeneity in association with nucleos(t)ide analogue treatment determined by MALDI-TOF MS  M. Rybicka,
Matrix-assisted laser desorption ionization time-of-flight mass spectrometry and PCR- based rapid diagnosis of Staphylococcus aureus bacteraemia  O. Clerc,
Active surveillance of antibiotic resistance prevalence in urinary tract and skin infections in the outpatient setting  A. Kronenberg, S. Koenig, S. Droz,
Matrix-assisted laser desorption ionization-time of flight mass spectrometry for fast and accurate identification of Pseudallescheria/ Scedosporium species 
The atypical pneumonias: clinical diagnosis and importance
Abstracts Clinical Microbiology and Infection
Matrix-assisted laser desorption ionization time-of-flight mass spectrometry identifies 90% of bacteria directly from blood culture vials  W. Moussaoui,
J.L. Balcázar  Clinical Microbiology and Infection 
G.C. Schito  Clinical Microbiology and Infection 
Three years experience of real-time PCR for the diagnosis of Q fever
Identification of Leishmania at the species level with matrix-assisted laser desorption ionization time-of-flight mass spectrometry  C. Cassagne, F. Pratlong,
Impact of antibiotic restrictions: the patient's perspective
CMI readers' survey Clinical Microbiology and Infection
The future of diagnostic bacteriology
Rapid detection of antibiotic resistance by MALDI-TOF mass spectrometry using a novel direct-on-target microdroplet growth assay  E.A. Idelevich, K. Sparbier,
Presentation transcript:

Diagnosis of Aerococcus urinae infections: Importance of matrix-assisted laser desorption ionization time-of-flight mass spectrometry and broad-range 16S rDNA PCR  O. Opota, G. Prod'hom, C. Andreutti-Zaugg, M. Dessauges, L. Merz, G. Greub, J.-P. Chave, K. Jaton  Clinical Microbiology and Infection  Volume 22, Issue 1, Pages e1-e2 (January 2016) DOI: 10.1016/j.cmi.2015.08.026 Copyright © 2015 European Society of Clinical Microbiology and Infectious Diseases Terms and Conditions

Fig. 1 Importance of matrix-assisted laser desorption ionization time-of-flight (MALDI-TOF) mass spectrometry (MS) and 16S rDNA PCR in Aerococcus urinae identification. The graph represents the identification of A. urinae from 1995 to 2015. From 1995 to 2004, no A. urinae strain was identified to the species level from clinical samples in our tertiary university hospital. After the introduction of MALDI-TOF MS into routine practice in our laboratory in 2009 May, we observed a significant increase in the rate of A. urinae identification. The broad-range PCR targeting the 16S rDNA gene became available in our laboratory in 2003. A. urinae was mainly identified from urine samples from patient suffering from urinary tract infection. Eleven severe cases of infection due to this organism are reported in this diagram (each mark represents one case); five of them were found with PCR targeting the 16S rRNA gene. The stars (*) mark 16S rDNA PCR performed directly on the clinical sample. Note that only two strains were resistant to ceftriaxone out of 176 strains for which an antibiotic susceptibility test had been performed. Clinical Microbiology and Infection 2016 22, e1-e2DOI: (10.1016/j.cmi.2015.08.026) Copyright © 2015 European Society of Clinical Microbiology and Infectious Diseases Terms and Conditions