CT images by texture analysis

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Presentation transcript:

CT images by texture analysis Differentiation between osteoblastic, osteolytic, mixed and healthy bone tissue in CT images by texture analysis Monika Béresova 1,4 , Andrés Larroza 2, Estanislao Arana 3, Ervin Berényi 1 , Lászlo Balkay 4, Silvia Ruiz-Espana5, David Moratal 5 1 Department of Medical Imaging, Radiology, University of Debrecen, Debrecen, Hungary 2 Department of Medicine, Universitat de València, Valencia, Spain 3 Department of Radiology, Fundación Instituto Valenciano de Oncología, Valencia, Spain 4 Department of Medical Imaging, Medical Imaging Clinic Nuclear Medicine, University of Debrecen, Debrecen, Hungary 5 Center for Biomaterials and Tissue Engineering, Universitat Politècnica de València, Valencia, Spain This work was partially supported by the „Richter Gedeon Talentum Alapítvány”!

INTRODUCTION I OBJECTIVES METHODS RESULT CONCLUSION Texture analysis Texture analysis refers to the characterization of regions in an image by their texture content. The measurement of the texture parameters important in these cases: quantitative description of texture histological analysis separation healthy tissue from pathological lesions facilitate diagnosis assessment of treatment planning „greater heterogeneity = worse prognosis” [Rodrigez M . 1998, 1999, Kim Y. 2013] 2/24

Texture parameters are: Global: - based on histogram analysis INTRODUCTION II OBJECTIVES METHODS RESULT CONCLUSION Texture parameters are: Global: - based on histogram analysis (min, max, mean, SD, variance, skewness, kurtosis, SD/mean) Local: - based on Co-occurrence matrix computing (contrast, correlation, energy, homogeneity, entropy) Regional: - intensity size-zone matrix - voxel alignment matrix Others: - convolution based area representation (Gabor & Wavelet filters) geometric features - box-count fractal dimension, surface area, volume, surface to volume ratio 3/24

How to compute gray-level co-occurrence matrix? INTRODUCTION III OBJECTIVES METHODS RESULT CONCLUSION How to compute gray-level co-occurrence matrix? „grayscale” preselection – levels : 8, 16, 64,… definition of pixelpairs: distance between the pixel of interest and its neighbour directions - for example: horizontal, vertical (in Matlab 4 directions 0°, 45°, 90°,135°) Siganl intensity Original picures To find Once Twice and so on 4/24

INTRODUCTION IV OBJECTIVES METHODS RESULT CONCLUSION How the different heterogeneity parameters reflect the image texture in general? Siganl intensity Original picures To find Once Twice and so on 5/24

The aim of this study was INTRODUCTION OBJECTIVES METHODS RESULT CONCLUSION The aim of this study was to perform texture analysis of the bone metastasis to find and describe the difference of heterogeneity parameters in osteolytic osteoblastic mixed (osteolytic and osteoblastic) and healthy bone lesions. to analyse the volume dependence of each investigated texture parameter 6/24

Binary masks: osteolitic, osteoblastic, mixed and healthy INTRODUCTION OBJECTIVES METHODS I RESULT CONCLUSION In this study 5 patients with vertebral metastatic lesions were examined using CT images. Pathological lesions were manually segmented and binary masks were created for them all in Matlab. Binary masks: osteolitic, osteoblastic, mixed and healthy

Heterogeneity parameters : INTRODUCTION OBJECTIVES METHODS II RESULT CONCLUSION ONCLUSION Heterogeneity parameters : histogram based features (min, max, mean, SD, Variance, SD/mean) 2D Co-occurrence matrix based features Normalization to 64 gray levels (COM matrix size 64x64) Matlab directions: A = 0° B = 45° C = 90° D = 135° Contrast, Correlation, Energy, Homogeneity, Entropy Final parameter is the average ( A, B, C, D) 8/24

OBJECTIVES METHODS III RESULT CONCLUSION INTRODUCTION OBJECTIVES METHODS III RESULT CONCLUSION CO-OCCURRENCE MATRIX MIXED MIXED OSTEOBLASTIC HEALTHY 9/24

Histogram (min, max, mean, SD, variance, SD/mean) and INTRODUCTION OBJECTIVES METHODS IV RESULT CONCLUSION Histogram (min, max, mean, SD, variance, SD/mean) and co-occurrence matrix (contrast, correlation, energy, entropy, homogeneity) features were extracted. For statistical comparisons, the segmented lesions were split into four groups according to their sizes: (1) 0-0.25 cm 3 (2) 0.25-0.5 cm3 (3) 0.5-1 cm3 (4) > 1 cm3 ROC analysis and Kolmogorov-Smirnov test were done and we used non-parametric Kruskal Wallis tests with Bonferroni correction to compare the different bone lesions. 10/24

INTRODUCTION OBJECTIVES METHODS RESULT I CONCLUSION A B A. Mixed vs. Osteoblastic B. Mixed vs. Healthy C. Healthy vs. Osteoblastic Based on reliability and ROC analysis smallest ROIs (group 1.) were discarded, and osteolytic lesions were also excluded from this study, because their sizes fell into the 0-0.25cm3 range. C 11/24

INTRODUCTION OBJECTIVES METHODS RESULT II CONCLUSION Based on the Kruskal-Wallis test significant differences were found at ROI size larger then 0.25 cm3 between: Mixed - Healthy lesions: maximum, mean, SD, variance, SD/mean, contrast Healthy - Osteoblastic lesions: maximum, mean, SD, variance, contrast, correlation Mixed - Osteoblastic lesions: maximum, mean, SD, variance, contrast 20/24

OBJECTIVES RESULT III METHODS CONCLUSION INTRODUCTION OBJECTIVES RESULT III METHODS CONCLUSION

INTRODUCTION OBJECTIVES METHODS RESULT CONCLUSION In conclusion, we found several heterogeneity parameters showing differences between metastatic bone lesions. Texture analysis was not reliable in small lesions (<0.25cm3), but we could differentiate the healthy, the mixed and the osteoblastic areas utilizing the following textural parameters: maximum, mean, SD, variance, contrast. The heterogeneity parameters allowed us to describe the differences between pathological bone lesions. Based on the volume dependence of the investigated textural parameters, the reliability of any texture indexes is affected by the spatial resolution of a given imaging modality. 23/24

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