Translating High-Throughput Phenotyping into Genetic Gain

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Presentation transcript:

Translating High-Throughput Phenotyping into Genetic Gain José Luis Araus, Shawn C. Kefauver, Mainassara Zaman-Allah, Mike S. Olsen, Jill E. Cairns  Trends in Plant Science  Volume 23, Issue 5, Pages 451-466 (May 2018) DOI: 10.1016/j.tplants.2018.02.001 Copyright © 2018 The Authors Terms and Conditions

Figure 1 Key Figure: Five Pillars of Increasing Genetic Gain in Breeding Programs (Adapted from [20]) High-throughput phenotyping contributes directly to three of the pillars, increasing selection accuracy by increasing heritability (H) through a priori or a posteriori control of spatial variation and improved disease phenotyping helping to identify the genetic variation available in a more efficient manner, and making the decision support systems more robust. By contrast, proper phenotyping contributes indirectly to optimization of these five components. Examples of high-throughput phenotyping tools are provided at the bottom. TPEs, target populations of environments, where the products of the breeding programs would be grown. Trends in Plant Science 2018 23, 451-466DOI: (10.1016/j.tplants.2018.02.001) Copyright © 2018 The Authors Terms and Conditions

Figure 2 Summary of the Different Remote-Sensing Tools Most Commonly Used to Assess Shoot Characteristics of the Crop under Field Conditions, Together with a Comparative List of the Potential Applications and Their Level of Technological Development and Adoption. Different radar options are not included. Trends in Plant Science 2018 23, 451-466DOI: (10.1016/j.tplants.2018.02.001) Copyright © 2018 The Authors Terms and Conditions

Figure I Examples of Potential Applications of Field Phenotyping with Red–Green–Blue (RGB) Images Produced by Conventional Digital Cameras. Different categories of traits are included: counting crop characteristics, monitoring plant/crop growth and development, and three-dimensional reconstructions. Part of the figure is redrawn from Fred Baret, INRA (EWG on Wheat Phenotyping to support Wheat Improvement). Trends in Plant Science 2018 23, 451-466DOI: (10.1016/j.tplants.2018.02.001) Copyright © 2018 The Authors Terms and Conditions

Figure I Different Categories of Potential and Actual Ground and Aerial Phenotyping Platforms, along with the Spectral Ranges Used for Different Remote-Sensing Tools. RGB cameras (VIS), multispectral and hyperspectral sensors and cameras, light detection and ranging (LiDAR) sensors, thermal sensors and cameras (TIR/LWIR), and the different categories of Radars. The horizontal axis is partially redrawn from [23]. The ground stationary platforms correspond to the Maricopa Agricultural Center (USA) and the ETH field phenotyping platform (Switzerland). The images of the phenomobile correspond to (from left to right) a proximal remote sensing buggy [21,104], the phenomobile lite (https://www.youtube.com/watch?v=o8DmF7Y-GpE), and a phenocart [99]. The unmanned helicopter is from Chapman et al. [105]. IR, infrared; LWIR, long-wave infrared; NIR, near-infrared; SWIR, short-wave infrared; TIR, thermal infrared; VIS, visible. Trends in Plant Science 2018 23, 451-466DOI: (10.1016/j.tplants.2018.02.001) Copyright © 2018 The Authors Terms and Conditions