Phylogenetic analysis

Slides:



Advertisements
Similar presentations
HIV INFECTION: Diagnostic strategy for patients with suspected HIV infection. This new testing algorithm, recommended in 2015 by the Centers for Disease.
Advertisements

Volume 102, Issue 6, Pages (December 1992)
Sequence and structure relatedness of matrix protein of human respiratory syncytial virus with matrix proteins of other negative-sense RNA viruses  K.
Volume 8, Issue 9, Pages R177-R185 (September 2000)
Di Liu, Weifeng Shi, George F Gao
Les Lang  Gastroenterology  Volume 133, Issue 1, (July 2007)
Eukaryotic Evolution: The Importance of Being Archaebacterial
Les Lang  Gastroenterology  Volume 133, Issue 1, (July 2007)
Approach to diagnosis of infective endocarditis
Evolution: Endogenous Viruses Provide Shortcuts in Antiviral Immunity
Volume 18, Issue 17, Pages R723-R724 (September 2008)
Genome Evolution: Horizontal Movements in the Fungi
H. Un, N. Johnson, A. Vos, T. Muller, A.R. Fooks, O. Aylan 
Nosocomial Transmission of Respiratory Syncytial Virus in an Outpatient Cancer Center  Helen Y. Chu, Janet A. Englund, Sara Podczervinski, Jane Kuypers,
A.K. Reddy, P. Garg, I. Kaur  Clinical Microbiology and Infection 
Variability of human immunodeficiency virus-1 in the female genital reservoir during genital reactivation of herpes simplex virus type 2  J. LeGoff, P.
Phototransduction in fan worm radiolar eyes
Prediction of protein structure
Pandemic Human Viruses Cause Decline of Endangered Great Apes
Zika virus genome from the Americas
Genome Evolution: Horizontal Movements in the Fungi
Darwin’s meadow revisited
Natural history and predictors of severity of chronic hepatitis C virus (HCV) and human immunodeficiency virus (HIV) co-infection  Anaïs Vallet-Pichard,
Neurobiology: The acid test for resting potassium channels
Viral Evolution: Mummy Virus Challenges Presumed History of Smallpox
Volume 154, Issue 4, Pages (March 2018)
A Unified Nomenclature System for the Nuclear Receptor Superfamily
A. Zeytinoğlu, S. Erensoy, H. Abacioğlu, A. A. Sayiner, T. Özacar, A
Volume 24, Issue 5, Pages R204-R206 (March 2014)
O. Adam, A. El Hussein, A. El Eragi, L. Jin 
Palaeontology: Scrapes of Dinosaur Courtship
No. 342-Hepatitis B and Pregnancy
Sex Determination: Balancing Selection in the Honey Bee
Novelty and Innovation in the History of Life
The real ‘domains’ of life
MicroRNAs: Hidden in the Genome
Life History Evolution: What Does a Menopausal Killer Whale Do?
Imaging for the Management of Community-Acquired Pneumonia
Volume 13, Issue 6, Pages R215-R216 (March 2003)
Қош келдіңіздер.
Morphological Phylogenetics in the Genomic Age
Occupational transmission of hepatitis C virus resulting from use of the same supermarket meat slicer  L. Bocket, S. Chevaliez, N. Talbodec, A. Sobaszek,
Human infection with H9N2 avian influenza in northern China
Volume 139, Issue 1, Pages (July 2010)
A Trojan Horse for Human Immunodeficiency Virus
V Duque, ÁA. Holguín, M. Silvestre, J. GonzÁAlez-Lahoz, V. Soriano 
Volume 25, Issue 19, Pages R815-R817 (October 2015)
Zika Virus in the Americas: A Review for Clinicians
Nuclear Gene Sequences from a Late Pleistocene Sloth Coprolite
Gene Regulation: Stable Noise
Tracing the Evolution of Hepatitis C Virus in the United States, Japan, and Egypt By Using the Molecular Clock  Masashi Mizokami, Yasuhito Tanaka  Clinical.
Sequence and structure relatedness of matrix protein of human respiratory syncytial virus with matrix proteins of other negative-sense RNA viruses  K.
Structure prediction: The state of the art
Planar Cell Polarity: Microtubules Make the Connection with Cilia
Early evolution of neurons
A manifesto for microbial genomics
Mammalian phylogeny: Genes and supertrees
FOXO transcription factors
Prevalence of CXCR4-tropic viruses in clustered transmission chains at the time of primary HIV-1 infection  P. Frange, L. Meyer, J. Ghosn, C. Deveau,
Keep the motor running Current Biology
Volume 26, Issue 24, Pages R1258-R1260 (December 2016)
Volume 7, Issue 6, Pages R147-R151 (June 2000)
Genome evolution: Sex and the transposable element
High prevalence of GB virus C/hepatitis G virus infection in different risk groups of HIV- infected patients  P. Clevenbergh, J. Durant, P. Halfon, A.
Gametophyte development
Structure prediction: Folding proteins by pattern recognition
Prolonged outbreak of human parainfluenza virus 3 infection in a stem cell transplant outpatient department: insights from molecular epidemiologic analysis 
Volume 139, Issue 1, Pages (July 2010)
Volume 18, Issue 5, Pages R198-R202 (March 2008)
The real ‘kingdoms’ of eukaryotes
Presentation transcript:

Phylogenetic analysis David M Hillis  Current Biology  Volume 7, Issue 3, Pages R129-R131 (March 1997) DOI: 10.1016/S0960-9822(97)70070-8

Figure 1 A phylogenetic analysis of human immunodeficiency viruses (sequenced and compared) from a Florida dentist, a series of his patients, and other infected individuals from the local community. The phylogenetic tree is presented as a circular diagram in which the most closely related taxa cluster together near the periphery, and deeper (older) connections are closer to the center of the circle. The phylogenetic analysis is consistent with the suspected transmission of the virus from the dentist to six of his patients (those in the shaded dental clade). Four other patients (D, H, F, and J), all of whom had other risk factors for HIV, seem to have been infected from other sources. One patient (J) seems to have been infected from two different sources. (LC, local control.) Current Biology 1997 7, R129-R131DOI: (10.1016/S0960-9822(97)70070-8)

Figure 2 A phylogenetic analysis (based mostly on ribosomal RNA genes) of organisms sampled from throughout the four-billion-year history of life. Current Biology 1997 7, R129-R131DOI: (10.1016/S0960-9822(97)70070-8)